Metabolomics—the link between genotypes and phenotypes

O Fiehn - Functional genomics, 2002 - Springer
Metabolites are the end products of cellular regulatory processes, and their levels can be
regarded as the ultimate response of biological systems to genetic or environmental …

13C metabolic flux analysis

W Wiechert - Metabolic engineering, 2001 - Elsevier
Metabolic flux analysis using 13C-labeled substrates has become an important tool in
metabolic engineering. It allows the detailed quantification of all intracellular fluxes in the …

INCA: a computational platform for isotopically non-stationary metabolic flux analysis

JD Young - Bioinformatics, 2014 - academic.oup.com
13C flux analysis studies have become an essential component of metabolic engineering
research. The scope of these studies has gradually expanded to include both isotopically …

13C-based metabolic flux analysis

N Zamboni, SM Fendt, M Rühl, U Sauer - Nature protocols, 2009 - nature.com
Stable isotope, and in particular 13C-based flux analysis, is the exclusive approach to
experimentally quantify the integrated responses of metabolic networks. Here we describe a …

Metabolic networks in motion: 13C‐based flux analysis

U Sauer - Molecular systems biology, 2006 - embopress.org
Many properties of complex networks cannot be understood from monitoring the
components—not even when comprehensively monitoring all protein or metabolite …

Map** photoautotrophic metabolism with isotopically nonstationary 13C flux analysis

JD Young, AA Shastri, G Stephanopoulos… - Metabolic …, 2011 - Elsevier
Understanding in vivo regulation of photoautotrophic metabolism is important for identifying
strategies to improve photosynthetic efficiency or re-route carbon fluxes to desirable end …

Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements

MR Antoniewicz, JK Kelleher, G Stephanopoulos - Metabolic engineering, 2006 - Elsevier
Metabolic fluxes, estimated from stable isotope studies, provide a key to quantifying
physiology in fields ranging from metabolic engineering to the analysis of human metabolic …

Peak antibody production is associated with increased oxidative metabolism in an industrially relevant fed‐batch CHO cell culture

N Templeton, J Dean, P Reddy… - Biotechnology and …, 2013 - Wiley Online Library
Cell metabolism can vary considerably over the course of a typical fed‐batch antibody
production process. However, the intracellular pathway alterations associated with various …

A universal framework for 13C metabolic flux analysis

W Wiechert, M Möllney, S Petersen, AA De Graaf - Metabolic engineering, 2001 - Elsevier
A general methodology is presented for the modeling, simulation, design, evaluation, and
statistical analysis of 13C-labeling experiments for metabolic flux analysis. The universal …

OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis

LE Quek, C Wittmann, LK Nielsen, JO Krömer - Microbial cell factories, 2009 - Springer
Background The quantitative analysis of metabolic fluxes, ie, in vivo activities of intracellular
enzymes and pathways, provides key information on biological systems in systems biology …