[HTML][HTML] Next-generation machine learning for biological networks

DM Camacho, KM Collins, RK Powers, JC Costello… - Cell, 2018 - cell.com
Machine learning, a collection of data-analytical techniques aimed at building predictive
models from multi-dimensional datasets, is becoming integral to modern biological research …

Metabolic flexibility as an adaptation to energy resources and requirements in health and disease

RL Smith, MR Soeters, RCI Wüst… - Endocrine …, 2018 - academic.oup.com
The ability to efficiently adapt metabolism by substrate sensing, trafficking, storage, and
utilization, dependent on availability and requirement, is known as metabolic flexibility. In …

Endothelial cell metabolism

G Eelen, P de Zeeuw, L Treps, U Harjes… - Physiological …, 2018 - journals.physiology.org
Endothelial cells (ECs) are more than inert blood vessel lining material. Instead, they are
active players in the formation of new blood vessels (angiogenesis) both in health and (life …

[HTML][HTML] Biomarkers of nutrition for development—folate review

LB Bailey, PJ Stover, H McNulty, MF Fenech… - The Journal of …, 2015 - Elsevier
Abstract The Biomarkers of Nutrition for Development (BOND) project is designed to provide
evidence-based advice to anyone with an interest in the role of nutrition in health …

A community-driven global reconstruction of human metabolism

I Thiele, N Swainston, RMT Fleming, A Hoppe… - Nature …, 2013 - nature.com
Multiple models of human metabolism have been reconstructed, but each represents only a
subset of our knowledge. Here we describe Recon 2, a community-driven, consensus' …

[HTML][HTML] Artificial intelligence and early detection of pancreatic cancer: 2020 summative review

B Kenner, ST Chari, D Kelsen, DS Klimstra, SJ Pandol… - Pancreas, 2021 - journals.lww.com
Despite considerable research efforts, pancreatic cancer is associated with a dire prognosis
and a 5-year survival rate of only 10%. Early symptoms of the disease are mostly …

Genome-scale models in human metabologenomics

A Mardinoglu, BØ Palsson - Nature Reviews Genetics, 2025 - nature.com
Metabologenomics integrates metabolomics with other omics data types to comprehensively
study the genetic and environmental factors that influence metabolism. These multi-omics …

ChemSpot: a hybrid system for chemical named entity recognition

T Rocktäschel, M Weidlich, U Leser - Bioinformatics, 2012 - academic.oup.com
Motivation: The accurate identification of chemicals in text is important for many applications,
including computer-assisted reconstruction of metabolic networks or retrieval of information …

Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE

Y Wang, JA Eddy, ND Price - BMC systems biology, 2012 - Springer
Background Human tissues perform diverse metabolic functions. Map** out these tissue-
specific functions in genome-scale models will advance our understanding of the metabolic …

Using networks to measure similarity between genes: association index selection

JIF Bass, A Diallo, J Nelson, JM Soto, CL Myers… - Nature …, 2013 - nature.com
Biological networks can be used to functionally annotate genes on the basis of interaction-
profile similarities. Metrics known as association indices can be used to quantify interaction …