Electrostatic interactions in biological DNA-related systems

AG Cherstvy - Physical Chemistry Chemical Physics, 2011 - pubs.rsc.org
In this perspective article, we focus on recent developments in the theory of charge effects in
biological DNA-related systems. The electrostatic effects on different levels of DNA …

Visualizing the formation and collapse of DNA toroids

B Van den Broek, MC Noom, J Van Mameren, C Battle… - Biophysical journal, 2010 - cell.com
In living organisms, DNA is generally confined into very small volumes. In most viruses,
positively charged multivalent ions assist the condensation of DNA into tightly packed …

Deciphering the structure of DNA toroids

LR Brewer - Integrative Biology, 2011 - academic.oup.com
Toroids are small donut shaped organizational units within sperm chromatin and viruses
containing DNA and protein. Investigators first characterized the dimensions of toroids …

Theory and simulations of toroidal and rod-like structures in single-molecule DNA condensation

R Cortini, BR Caré, JM Victor, M Barbi - The Journal of Chemical …, 2015 - pubs.aip.org
DNA condensation by multivalent cations plays a crucial role in genome packaging in
viruses and sperm heads, and has been extensively studied using single-molecule …

Bundling in semiflexible polymers: A theoretical overview

P Benetatos, YS Jho - Advances in Colloid and Interface Science, 2016 - Elsevier
Supramolecular assemblies of polymers are key modules to sustain the structure of cells
and their function. The main elements of these assemblies are charged semiflexible …

Competition between supercoils and toroids in single molecule DNA condensation

D Argudo, PK Purohit - Biophysical Journal, 2012 - cell.com
The condensation of free DNA into toroidal structures in the presence of multivalent ions and
polypeptides is well known. Recent single molecule experiments have shown that …

Complex kinetics of DNA condensation revealed through DNA twist tracing

W Li, WJ Wong, CJ Lim, HP Ju, M Li, J Yan, PY Wang - Physical Review E, 2015 - APS
Toroid formation is an important mechanism for DNA condensation in cells. The length
change during DNA condensation was investigated in previous single-molecule …

Condensation of circular DNA

EL Starostin - The Journal of Chemical Physics, 2013 - pubs.aip.org
A simple model of a circularly closed double-stranded DNA in a poor solvent is considered
as an example of a semi-flexible polymer with self-attraction. To find the ground states, the …

Electrostatic interactions in dense DNA phases and protein-DNA complexes

AG Cherstvy - Electrostatics, 2012 - books.google.com
Charges. Many constituents of living cells bear large charges on their surfaces. The list
includes DNA/RNA nucleic acids [1], cellular lipid membranes [2], DNAbinding [3, 4] and …

[PDF][PDF] Do not circulate

A Page - amherst.edu
DNA is an incredibly diverse biomaterial capable of self-assembly into predetermined
nanostructures [1-6]. Combining DNA with proteins for regulatory purposes or to build …