State of the art review and report of new tool for drug discovery

Y Martinez-Lopez, Y Caballero… - Current topics in …, 2017 - ingentaconnect.com
Background: There are a great number of tools that can be used in QSAR/QSPR studies;
they are implemented in several programs that are reviewed in this report. The usefulness of …

Graph derivative indices interpretation from the quantum mechanics perspective

R Vivas-Reyes, O Martínez-Santiago… - Journal of Mathematical …, 2023 - Springer
This contribution examines the interpretation of the Graph Derivative Indices (GDIs) from the
Quantum Mechanics (QM) perspective and its relation with the Hückel molecular orbital …

Overproduce and select, or determine optimal molecular descriptor subset via configuration space optimization? Application to the prediction of ecotoxicological …

LA García‐González, Y Marrero‐Ponce… - Molecular …, 2023 - Wiley Online Library
Predicting the likely biological activity (or property) of compounds is a fundamental and
challenging task in the drug discovery process. Current computational methodologies aim to …

Choquet integral-based fuzzy molecular characterizations: when global definitions are computed from the dependency among atom/bond contributions (LOVIs/LOEIs)

CR García-Jacas, L Cabrera-Leyva… - Journal of …, 2018 - Springer
Background Several topological (2D) and geometric (3D) molecular descriptors (MDs) are
calculated from local vertex/edge invariants (LOVIs/LOEIs) by performing an aggregation …

GOWAWA aggregation operator‐based global molecular characterizations: weighting atom/bond contributions (LOVIs/LOEIs) according to their influence in the …

CR García‐Jacas, L Cabrera‐Leyva… - Molecular …, 2018 - Wiley Online Library
A different perspective to compute global weighted definitions of molecular descriptors from
the contributions of each atom (LOVIs) or covalent bond (LOEIs) within a molecule is …

Exploring the QSAR's predictive truthfulness of the novel N-tuple discrete derivative indices on benchmark datasets

O Martínez-Santiago, Y Marrero-Ponce… - SAR and QSAR in …, 2017 - Taylor & Francis
Graph derivative indices (GDIs) have recently been defined over N-atoms (N= 2, 3 and 4)
simultaneously, which are based on the concept of derivatives in discrete mathematics (finite …

Physico-chemical and structural interpretation of discrete derivative indices on N-tuples atoms

O Martínez-Santiago, Y Marrero-Ponce… - International journal of …, 2016 - mdpi.com
This report examines the interpretation of the Graph Derivative Indices (GDIs) from three
different perspectives (ie, in structural, steric and electronic terms). It is found that the …

Is molecular alignment an indispensable requirement in the MIA‐QSAR method?

SJ Barigye, MP Freitas - Journal of Computational Chemistry, 2015 - Wiley Online Library
For a decade, the multivariate image analysis applied to quantitative structure–activity
relationship (MIA‐QSAR) approach has been successfully used in the modeling of several …

Generalized molecular descriptors derived from event-based discrete derivative

O Martínez-Santiago, RM Cabrera… - Current …, 2016 - ingentaconnect.com
In the present study, a generalized approach for molecular structure characterization is
introduced, based on the relation frequency matrix (F) representation of the molecular graph …

Higher-order and mixed discrete derivatives such as a novel graph-theoretical invariant for generating new molecular descriptors

O Martínez-Santiago, Y Marrero-Ponce… - Current Topics in …, 2019 - ingentaconnect.com
Background: Recently, some authors have defined new molecular descriptors (MDs) based
on the use of the Graph Discrete Derivative, known as Graph Derivative Indices (GDI). This …