Targeted capture in evolutionary and ecological genomics
The rapid expansion of next‐generation sequencing has yielded a powerful array of tools to
address fundamental biological questions at a scale that was inconceivable just a few years …
address fundamental biological questions at a scale that was inconceivable just a few years …
How to make a sex chromosome
Sex chromosomes can evolve once recombination is halted between a homologous pair of
chromosomes. Owing to detailed studies using key model systems, we have a nuanced …
chromosomes. Owing to detailed studies using key model systems, we have a nuanced …
Single-molecule sequencing and optical map** yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity
Background Although draft genomes are available for most agronomically important plant
species, the majority are incomplete, highly fragmented, and often riddled with assembly …
species, the majority are incomplete, highly fragmented, and often riddled with assembly …
Hyb‐Seq: Combining target enrichment and genome skimming for plant phylogenomics
• Premise of the study: Hyb‐Seq, the combination of target enrichment and genome
skimming, allows simultaneous data collection for low‐copy nuclear genes and high‐copy …
skimming, allows simultaneous data collection for low‐copy nuclear genes and high‐copy …
Evolutionary origins and dynamics of octoploid strawberry subgenomes revealed by dense targeted capture linkage maps
JA Tennessen, R Govindarajulu… - Genome biology and …, 2014 - academic.oup.com
Whole-genome duplications are radical evolutionary events that have driven speciation and
adaptation in many taxa. Higher-order polyploids have complex histories often including …
adaptation in many taxa. Higher-order polyploids have complex histories often including …
Fragaria: A genus with deep historical roots and ripe for evolutionary and ecological insights
The cultivated strawberry, Fragaria× ananassa, is one of the youngest domesticated plants.
Its 18th century origin via hybridization in Europe between the North American F. virginiana …
Its 18th century origin via hybridization in Europe between the North American F. virginiana …
Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species
H Hirakawa, K Shirasawa, S Kosugi, K Tashiro… - DNA …, 2014 - academic.oup.com
Cultivated strawberry (Fragaria x ananassa) is octoploid and shows allogamous behaviour.
The present study aims at dissecting this octoploid genome through comparison with its wild …
The present study aims at dissecting this octoploid genome through comparison with its wild …
A target enrichment method for gathering phylogenetic information from hundreds of loci: an example from the Compositae
• Premise of the study: The Compositae (Asteraceae) are a large and diverse family of
plants, and the most comprehensive phylogeny to date is a meta‐tree based on 10 …
plants, and the most comprehensive phylogeny to date is a meta‐tree based on 10 …
Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae)
JA Nicholls, RT Pennington, EJM Koenen… - Frontiers in Plant …, 2015 - frontiersin.org
Evolutionary radiations are prominent and pervasive across many plant lineages in diverse
geographical and ecological settings; in neotropical rainforests there is growing evidence …
geographical and ecological settings; in neotropical rainforests there is growing evidence …
Plant sex chromosomes
D Charlesworth - Annual review of plant biology, 2016 - annualreviews.org
Although individuals in most flowering plant species, and in many haploid plants, have both
sex functions, dioecious species—in which individuals have either male or female functions …
sex functions, dioecious species—in which individuals have either male or female functions …