Targeted capture in evolutionary and ecological genomics

MR Jones, JM Good - Molecular ecology, 2016 - Wiley Online Library
The rapid expansion of next‐generation sequencing has yielded a powerful array of tools to
address fundamental biological questions at a scale that was inconceivable just a few years …

How to make a sex chromosome

AE Wright, R Dean, F Zimmer, JE Mank - Nature communications, 2016 - nature.com
Sex chromosomes can evolve once recombination is halted between a homologous pair of
chromosomes. Owing to detailed studies using key model systems, we have a nuanced …

Single-molecule sequencing and optical map** yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity

PP Edger, R VanBuren, M Colle, TJ Poorten… - …, 2018 - academic.oup.com
Background Although draft genomes are available for most agronomically important plant
species, the majority are incomplete, highly fragmented, and often riddled with assembly …

Hyb‐Seq: Combining target enrichment and genome skimming for plant phylogenomics

K Weitemier, SCK Straub, RC Cronn… - Applications in plant …, 2014 - Wiley Online Library
• Premise of the study: Hyb‐Seq, the combination of target enrichment and genome
skimming, allows simultaneous data collection for low‐copy nuclear genes and high‐copy …

Evolutionary origins and dynamics of octoploid strawberry subgenomes revealed by dense targeted capture linkage maps

JA Tennessen, R Govindarajulu… - Genome biology and …, 2014 - academic.oup.com
Whole-genome duplications are radical evolutionary events that have driven speciation and
adaptation in many taxa. Higher-order polyploids have complex histories often including …

Fragaria: A genus with deep historical roots and ripe for evolutionary and ecological insights

A Liston, R Cronn, TL Ashman - American journal of botany, 2014 - Wiley Online Library
The cultivated strawberry, Fragaria× ananassa, is one of the youngest domesticated plants.
Its 18th century origin via hybridization in Europe between the North American F. virginiana …

Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species

H Hirakawa, K Shirasawa, S Kosugi, K Tashiro… - DNA …, 2014 - academic.oup.com
Cultivated strawberry (Fragaria x ananassa) is octoploid and shows allogamous behaviour.
The present study aims at dissecting this octoploid genome through comparison with its wild …

A target enrichment method for gathering phylogenetic information from hundreds of loci: an example from the Compositae

JR Mandel, RB Dikow, VA Funk… - Applications in plant …, 2014 - Wiley Online Library
• Premise of the study: The Compositae (Asteraceae) are a large and diverse family of
plants, and the most comprehensive phylogeny to date is a meta‐tree based on 10 …

Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae)

JA Nicholls, RT Pennington, EJM Koenen… - Frontiers in Plant …, 2015 - frontiersin.org
Evolutionary radiations are prominent and pervasive across many plant lineages in diverse
geographical and ecological settings; in neotropical rainforests there is growing evidence …

Plant sex chromosomes

D Charlesworth - Annual review of plant biology, 2016 - annualreviews.org
Although individuals in most flowering plant species, and in many haploid plants, have both
sex functions, dioecious species—in which individuals have either male or female functions …