Microbial diversity in extreme environments

WS Shu, LN Huang - Nature Reviews Microbiology, 2022 - nature.com
A wide array of microorganisms, including many novel, phylogenetically deeply rooted taxa,
survive and thrive in extreme environments. These unique and reduced-complexity …

Diversity, ecology and evolution of Archaea

BJ Baker, V De Anda, KW Seitz, N Dombrowski… - Nature …, 2020 - nature.com
Compared to bacteria, our knowledge of archaeal biology is limited. Historically,
microbiologists have mostly relied on culturing and single-gene diversity surveys to …

Valid publication of the names of forty-two phyla of prokaryotes

A Oren, GM Garrity - International Journal of Systematic …, 2021 - microbiologyresearch.org
After the International Committee on Systematics of Prokaryotes (ICSP) had voted to include
the rank of phylum in the rules of the International Code of Nomenclature of Prokaryotes …

A standardized archaeal taxonomy for the Genome Taxonomy Database

C Rinke, M Chuvochina, AJ Mussig, PA Chaumeil… - Nature …, 2021 - nature.com
The accrual of genomic data from both cultured and uncultured microorganisms provides
new opportunities to develop systematic taxonomies based on evolutionary relationships …

[HTML][HTML] Hydroxylamine and the nitrogen cycle: a review

A Soler-Jofra, J Pérez, MCM Van Loosdrecht - Water Research, 2021 - Elsevier
Aerobic ammonium oxidizing bacteria were first isolated more than 100 years ago and
hydroxylamine is known to be an intermediate. The enzymatic steps involving …

Major new microbial groups expand diversity and alter our understanding of the tree of life

CJ Castelle, JF Banfield - Cell, 2018 - cell.com
The recent recovery of genomes for organisms from phyla with no isolated representative
(candidate phyla) via cultivation-independent genomics enabled delineation of major new …

Archaea and the origin of eukaryotes

L Eme, A Spang, J Lombard, CW Stairs… - Nature Reviews …, 2017 - nature.com
Woese and Fox's 1977 paper on the discovery of the Archaea triggered a revolution in the
field of evolutionary biology by showing that life was divided into not only prokaryotes and …

Diagnosis of soil contamination using microbiological indices: A review on heavy metal pollution

J Tang, J Zhang, L Ren, Y Zhou, J Gao, L Luo… - Journal of …, 2019 - Elsevier
Heavy metal contamination of soil has become a serious global issue because of their
persistence in the environment and the non-biodegradable nature leading to their …

Nitrification and nitrifiers in acidic soils

Y Li, SJ Chapman, GW Nicol, H Yao - Soil Biology and Biochemistry, 2018 - Elsevier
Nitrification, as a crucial step in nitrogen cycling and plant nutrition, is a biologically
mediated process responsible for enormous losses of nitrogen fertilizer and a contributor to …

Nitrous oxide production by ammonia oxidizers: physiological diversity, niche differentiation and potential mitigation strategies

JI Prosser, L Hink, C Gubry‐Rangin… - Global Change …, 2020 - Wiley Online Library
Oxidation of ammonia to nitrite by bacteria and archaea is responsible for global emissions
of nitrous oxide directly and indirectly through provision of nitrite and, after further oxidation …