Cross-linking mass spectrometry for investigating protein conformations and protein–protein interactions─ a method for all seasons

L Piersimoni, PL Kastritis, C Arlt, A Sinz - Chemical Reviews, 2021 - ACS Publications
Mass spectrometry (MS) has become one of the key technologies of structural biology. In this
review, the contributions of chemical cross-linking combined with mass spectrometry (XL …

Cross-linking mass spectrometry (XL-MS): An emerging technology for interactomics and structural biology

C Yu, L Huang - Analytical chemistry, 2017 - pmc.ncbi.nlm.nih.gov
Protein-protein interactions are fundamental to the formation of intricate interaction networks
and the assembly of multisubunit protein complexes that represent the functional …

Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification

F Liu, P Lössl, R Scheltema, R Viner… - Nature communications, 2017 - nature.com
We describe optimized fragmentation schemes and data analysis strategies substantially
enhancing the depth and accuracy in identifying protein cross-links using non-restricted …

A cross-linking/mass spectrometry workflow based on MS-cleavable cross-linkers and the MeroX software for studying protein structures and protein–protein …

C Iacobucci, M Götze, CH Ihling, C Piotrowski, C Arlt… - Nature protocols, 2018 - nature.com
Chemical cross-linking in combination with mass spectrometric analysis of the created cross-
linked products is an emerging technology aimed at deriving valuable structural information …

Cross‐linking/mass spectrometry for studying protein structures and protein–protein interactions: where are we now and where should we go from here?

A Sinz - Angewandte Chemie International Edition, 2018 - Wiley Online Library
Structural mass spectrometry (MS) is gaining increasing importance for deriving valuable
three‐dimensional structural information on proteins and protein complexes, and it …

The interactome of intact mitochondria by cross-linking mass spectrometry provides evidence for coexisting respiratory supercomplexes

F Liu, P Lössl, BM Rabbitts, RS Balaban… - Molecular & Cellular …, 2018 - ASBMB
Mitochondria exert an immense amount of cytophysiological functions, but the structural
basis of most of these processes is still poorly understood. Here we use cross-linking mass …

Integration of mass spectrometry data for structural biology

HM Britt, T Cragnolini, K Thalassinos - Chemical Reviews, 2021 - ACS Publications
Mass spectrometry (MS) is increasingly being used to probe the structure and dynamics of
proteins and the complexes they form with other macromolecules. There are now several …

Chemical cross-linking with mass spectrometry: a tool for systems structural biology

JD Chavez, JE Bruce - Current opinion in chemical biology, 2019 - Elsevier
Highlights•Cross-linking-mass spectrometry constitutes a chemical method to produce
protein complex structural model constraints.•A wide range of sample types are applicable …

Cleavable Cross-Linkers and Mass Spectrometry for the Ultimate Task of Profiling Protein–Protein Interaction Networks in Vivo

M Matzinger, K Mechtler - Journal of proteome research, 2020 - ACS Publications
Cross-linking mass spectrometry (XL-MS) has matured into a potent tool to identify protein–
protein interactions or to uncover protein structures in living cells, tissues, or organelles. The …

Histone interaction landscapes visualized by crosslinking mass spectrometry in intact cell nuclei

D Fasci, H van Ingen, RA Scheltema… - Molecular & Cellular …, 2018 - ASBMB
Cells organize their actions partly through tightly controlled protein-protein interactions—
collectively termed the interactome. Here we use crosslinking mass spectrometry (XL-MS) to …