Transcriptional responses to ppGpp and DksA

RL Gourse, AY Chen, S Gopalkrishnan… - Annual review of …, 2018 - annualreviews.org
The stringent response to nutrient deprivation is a stress response found throughout the
bacterial domain of life. Although first described in proteobacteria for matching ribosome …

The bacterial universal stress protein: function and regulation

K Kvint, L Nachin, A Diez, T Nyström - Current opinion in microbiology, 2003 - Elsevier
The universal stress protein A (UspA) superfamily encompasses an ancient and conserved
group of proteins that are found in bacteria, Archea, fungi, flies and plants. The Escherichia …

[HTML][HTML] Residual guanosine 3 ', 5 '-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations.

H **ao, M Kalman, K Ikehara, S Zemel, G Glaser… - Journal of Biological …, 1991 - Elsevier
It was known previously that 1) the relA gene of Escherichia coli encodes an enzyme
capable of guanosine 3', 5'-bispyrophosphate (ppGpp) synthesis, 2) an uncharacterized …

Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro

MM Barker, T Gaal, CA Josaitis, RL Gourse - Journal of molecular biology, 2001 - Elsevier
To determine the role of ppGpp in both negative and positive regulation of transcription
initiation during exponential growth in Escherichia coli, we examined transcription in …

DksA potentiates direct activation of amino acid promoters by ppGpp

BJ Paul, MB Berkmen… - Proceedings of the …, 2005 - National Acad Sciences
Amino acid starvation in Escherichia coli results in a spectrum of changes in gene
expression, including inhibition of rRNA and tRNA promoters and activation of certain …

Regulation of ς factor competition by the alarmone ppGpp

M Jishage, K Kvint, V Shingler… - Genes & …, 2002 - genesdev.cshlp.org
Many regulons controlled by alternative ς factors, including ςS and ς32, are poorly induced
in cells lacking the alarmone ppGpp. We show that ppGpp is not absolutely required for the …

Mechanisms of gene regulation in the general control of amino acid biosynthesis in Saccharomyces cerevisiae

AG Hinnebusch - Microbiological reviews, 1988 - Am Soc Microbiol
A large number of genes encoding enzymes in multiple amino acid biosynthetic pathways
are under a common control in the yeast Saccharomyces cerevisiae. Expression of these …

rRNA TRANSCRIPTION AND GROWTH RATE–DEPENDENT REGULATION OF RIBOSOME SYNTHESIS IN ESCHERICHIA COLI

RL Gourse, T Gaal, MS Bartlett… - Annual review of …, 1996 - annualreviews.org
The synthesis of ribosomal RNA is the rate-limiting step in ribosome synthesis in bacteria.
There are multiple mechanisms that determine the rate of rRNA synthesis. Ribosomal RNA …

Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP

MM Barker, T Gaal, RL Gourse - Journal of molecular biology, 2001 - Elsevier
Strains containing ppGpp, a nucleotide whose synthesis is dependent on the RelA and
SpoT proteins of Escherichia coli, display slightly lower rRNA promoter activity and much …

[HTML][HTML] Function of E. coli RNA polymerase σ factor-σ70 in promoter-proximal pausing

BZ Ring, WS Yarnell, JW Roberts - Cell, 1996 - cell.com
The σ factor σ 70 of E. coli RNA polymerase acts not only in initiation, but also at an early
stage of elongation to induce a transcription pause, and simultaneously to allow the phage λ …