Yeast metabolic engineering for hemicellulosic ethanol production

JH Van Vleet, TW Jeffries - Current Opinion in Biotechnology, 2009‏ - Elsevier
Efficient fermentation of hemicellulosic sugars is critical for the bioconversion of
lignocellulosics to ethanol. Efficient sugar uptake through the heterologous expression of …

From genotype to phenotype: computational approaches for inferring microbial traits relevant to the food industry

ST Karlsen, MH Rau, BJ Sánchez… - FEMS Microbiology …, 2023‏ - academic.oup.com
When selecting microbial strains for the production of fermented foods, various microbial
phenotypes need to be taken into account to achieve target product characteristics, such as …

DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways

Z Shao, H Zhao, H Zhao - Nucleic acids research, 2009‏ - academic.oup.com
The assembly of large recombinant DNA encoding a whole biochemical pathway or genome
represents a significant challenge. Here, we report a new method, DNA assembler, which …

Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments

K Zhuang, M Izallalen, P Mouser, H Richter… - The ISME …, 2011‏ - academic.oup.com
The advent of rapid complete genome sequencing, and the potential to capture this
information in genome-scale metabolic models, provide the possibility of comprehensively …

Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ 661 and proposing alternative drug targets

N Jamshidi, BØ Palsson - BMC systems biology, 2007‏ - Springer
Background: Mycobacterium tuberculosis continues to be a major pathogen in the third
world, killing almost 2 million people a year by the most recent estimates. Even in …

[کتاب][B] Biofuels: biotechnology, chemistry, and sustainable development

DM Mousdale - 2008‏ - taylorfrancis.com
Evaluating a wealth of quantitative data, Biofuels: Biotechnology, Chemistry, and
Sustainable Development discusses different types of biofuels, the science behind their …

A reliable simulator for dynamic flux balance analysis

K Höffner, SM Harwood… - Biotechnology and …, 2013‏ - Wiley Online Library
Dynamic flux balance analysis (DFBA) provides a platform for detailed design, control and
optimization of biochemical process technologies. It is a promising modeling framework that …

Large‐scale identification of genetic design strategies using local search

DS Lun, G Rockwell, NJ Guido, M Baym… - molecular systems …, 2009‏ - embopress.org
In the past decade, computational methods have been shown to be well suited to unraveling
the complex web of metabolic reactions in biological systems. Methods based on flux …

Engineering of microorganisms for the production of biofuels and perspectives based on systems metabolic engineering approaches

YS Jang, JM Park, S Choi, YJ Choi, JH Cho… - Biotechnology …, 2012‏ - Elsevier
The increasing oil price and environmental concerns caused by the use of fossil fuel have
renewed our interest in utilizing biomass as a sustainable resource for the production of …

Dynamic flux balance modeling of microbial co‐cultures for efficient batch fermentation of glucose and xylose mixtures

TJ Hanly, MA Henson - Biotechnology and bioengineering, 2011‏ - Wiley Online Library
Sequential uptake of pentose and hexose sugars that compose lignocellulosic biomass
limits the ability of pure microbial cultures to efficiently produce value‐added bioproducts. In …