Mechanisms and regulation of protein synthesis in mitochondria
E Kummer, N Ban - Nature Reviews Molecular Cell Biology, 2021 - nature.com
Mitochondria are cellular organelles responsible for generation of chemical energy in the
process called oxidative phosphorylation. They originate from a bacterial ancestor and …
process called oxidative phosphorylation. They originate from a bacterial ancestor and …
Challenges and opportunities in cryo-EM single-particle analysis
D Lyumkis - Journal of Biological Chemistry, 2019 - ASBMB
Cryogenic electron microscopy (cryo-EM) enables structure determination of
macromolecular objects and their assemblies. Although the techniques have been …
macromolecular objects and their assemblies. Although the techniques have been …
CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks
Cryo-electron microscopy (cryo-EM) single-particle analysis has proven powerful in
determining the structures of rigid macromolecules. However, many imaged protein …
determining the structures of rigid macromolecules. However, many imaged protein …
3D variability analysis: Resolving continuous flexibility and discrete heterogeneity from single particle cryo-EM
Single particle cryo-EM excels in determining static structures of protein molecules, but
existing 3D reconstruction methods have been ineffective in modelling flexible proteins. We …
existing 3D reconstruction methods have been ineffective in modelling flexible proteins. We …
Deep learning-based mixed-dimensional Gaussian mixture model for characterizing variability in cryo-EM
Structural flexibility and/or dynamic interactions with other molecules is a critical aspect of
protein function. Cryogenic electron microscopy (cryo-EM) provides direct visualization of …
protein function. Cryogenic electron microscopy (cryo-EM) provides direct visualization of …
Uncovering structural ensembles from single-particle cryo-EM data using cryoDRGN
Single-particle cryogenic electron microscopy (cryo-EM) has emerged as a powerful
technique to visualize the structural landscape sampled by a protein complex. However …
technique to visualize the structural landscape sampled by a protein complex. However …
Addressing preferred specimen orientation in single-particle cryo-EM through tilting
We present a strategy for tackling preferred specimen orientation in single-particle cryogenic
electron microscopy by employing tilts during data collection. We also describe a tool to …
electron microscopy by employing tilts during data collection. We also describe a tool to …
Assembly landscape for the bacterial large ribosomal subunit
Assembly of ribosomes in bacteria is highly efficient, taking~ 2-3 min, but this makes the
abundance of assembly intermediates very low, which is a challenge for mechanistic …
abundance of assembly intermediates very low, which is a challenge for mechanistic …
Deregulation of ribosome biogenesis in nitrite-oxidizing bacteria leads to nitrite accumulation
W **ong, Y Ye, D He, S He, Y **ang… - Environmental …, 2023 - ACS Publications
Nitrite (NO2–) accumulation caused by nitrite-oxidizing bacteria (NOB) inhibition in
nitrification is a double-edged sword, ie, a disaster in aquatic environments but a hope for …
nitrification is a double-edged sword, ie, a disaster in aquatic environments but a hope for …
Cryo-EM captures early ribosome assembly in action
Ribosome biogenesis is a fundamental multi-step cellular process in all domains of life that
involves the production, processing, folding, and modification of ribosomal RNAs (rRNAs) …
involves the production, processing, folding, and modification of ribosomal RNAs (rRNAs) …