Statistical inference for stochastic simulation models–theory and application

F Hartig, JM Calabrese, B Reineking… - Ecology …, 2011 - Wiley Online Library
Ecology Letters (2011) 14: 816–827 Abstract Statistical models are the traditional choice to
test scientific theories when observations, processes or boundary conditions are subject to …

On the species abundance distribution in applied ecology and biodiversity management

TJ Matthews, RJ Whittaker - Journal of Applied Ecology, 2015 - Wiley Online Library
The species abundance distribution (SAD) is an important concept in ecology, and much
work has focused on the SAD in a theoretical context. However, less focus has been placed …

Asymmetric density dependence shapes species abundances in a tropical tree community

LS Comita, HC Muller-Landau, S Aguilar, SP Hubbell - Science, 2010 - science.org
The factors determining species commonness and rarity are poorly understood, particularly
in highly diverse communities. Theory predicts that interactions with neighbors of the same …

Statistical mechanics of ecological systems: Neutral theory and beyond

S Azaele, S Suweis, J Grilli, I Volkov, JR Banavar… - Reviews of Modern …, 2016 - APS
The simplest theories often have much merit and many limitations, and, in this vein, the
value of neutral theory (NT) of biodiversity has been the subject of much debate over the …

Neutral theory and the species abundance distribution: recent developments and prospects for unifying niche and neutral perspectives

TJ Matthews, RJ Whittaker - Ecology and evolution, 2014 - Wiley Online Library
Published in 2001, The U nified N eutral T heory of B iodiversity and B iogeography (UNTB)
emphasizes the importance of stochastic processes in ecological community structure, and …

Ecological filtering or random extinction? Beta‐diversity patterns and the importance of niche‐based and neutral processes following habitat loss

T Püttker, A de Arruda Bueno, PI Prado, R Pardini - Oikos, 2015 - Wiley Online Library
Although both niche‐based and neutral processes are involved in community assembly,
most models on the effects of habitat loss are stochastic, assuming neutral communities …

Reconciling neutral community models and environmental filtering: theory and an empirical test

F Jabot, RS Etienne, J Chave - Oikos, 2008 - Wiley Online Library
It is widely believed that the neutral theory of biodiversity cannot be used for parameter
inference if the assumption of neutrality is not met. The goal of this work is to extend this …

Rank clocks and plant community dynamics

SL Collins, KN Suding, EE Cleland, M Batty… - Ecology, 2008 - Wiley Online Library
Summarizing complex temporal dynamics in communities is difficult to achieve in a way that
yields an intuitive picture of change. Rank clocks and rank abundance statistics provide a …

Drivers of β‐diversity along latitudinal gradients revisited

H Qian, S Chen, L Mao… - Global Ecology and …, 2013 - Wiley Online Library
Aim Ecologists have generally agreed that β‐diversity is driven at least in part by ecological
processes and mechanisms of community assembly and is a key determinant of global …

[HTML][HTML] Emergent functional organization of gut microbiomes in health and diseases

M Seppi, J Pasqualini, S Facchin, EV Savarino… - Biomolecules, 2023 - mdpi.com
Continuous and significant progress in sequencing technologies and bioinformatics
pipelines has revolutionized our comprehension of microbial communities, especially for …