Surveillance of antimicrobial resistance in low-and middle-income countries: a scattered picture
Data on comprehensive population-based surveillance of antimicrobial resistance is lacking.
In low-and middle-income countries, the challenges are high due to weak laboratory …
In low-and middle-income countries, the challenges are high due to weak laboratory …
Performance and application of 16S rRNA gene cycle sequencing for routine identification of bacteria in the clinical microbiology laboratory
DL Church, L Cerutti, A Gürtler, T Griener… - Clinical microbiology …, 2020 - Am Soc Microbiol
This review provides a state-of-the-art description of the performance of Sanger cycle
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …
Sequencing-based methods and resources to study antimicrobial resistance
Antimicrobial resistance extracts high morbidity, mortality and economic costs yearly by
rendering bacteria immune to antibiotics. Identifying and understanding antimicrobial …
rendering bacteria immune to antibiotics. Identifying and understanding antimicrobial …
Using genomics to track global antimicrobial resistance
The recent advancements in rapid and affordable DNA sequencing technologies have
revolutionized diagnostic microbiology and microbial surveillance. The availability of …
revolutionized diagnostic microbiology and microbial surveillance. The availability of …
Mechanisms and clinical relevance of bacterial heteroresistance
Antibiotic heteroresistance is a phenotype in which a bacterial isolate contains
subpopulations of cells that show a substantial reduction in antibiotic susceptibility …
subpopulations of cells that show a substantial reduction in antibiotic susceptibility …
Genomics and pathotypes of the many faces of Escherichia coli
J Geurtsen, M de Been, E Weerdenburg… - FEMS microbiology …, 2022 - academic.oup.com
Escherichia coli is the most researched microbial organism in the world. Its varied impact on
human health, consisting of commensalism, gastrointestinal disease, or extraintestinal …
human health, consisting of commensalism, gastrointestinal disease, or extraintestinal …
PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens
Background Antibiotic resistance is a major health problem, as drugs that were once highly
effective no longer cure bacterial infections. WGS has previously been shown to be an …
effective no longer cure bacterial infections. WGS has previously been shown to be an …
Oxford Nanopore MinION sequencing and genome assembly
H Lu, F Giordano, Z Ning - Genomics, Proteomics and …, 2016 - academic.oup.com
The revolution of genome sequencing is continuing after the successful second-generation
sequencing (SGS) technology. The third-generation sequencing (TGS) technology, led by …
sequencing (SGS) technology. The third-generation sequencing (TGS) technology, led by …
DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data
Background Growing concerns about increasing rates of antibiotic resistance call for
expanded and comprehensive global monitoring. Advancing methods for monitoring of …
expanded and comprehensive global monitoring. Advancing methods for monitoring of …
Antibiotic resistance and the MRSA problem
Staphylococcus aureus is capable of becoming resistant to all classes of antibiotics clinically
available and resistance can develop through de novo mutations in chromosomal genes or …
available and resistance can develop through de novo mutations in chromosomal genes or …