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Identification of cancer driver genes based on nucleotide context
Cancer genomes contain large numbers of somatic mutations but few of these mutations
drive tumor development. Current approaches either identify driver genes on the basis of …
drive tumor development. Current approaches either identify driver genes on the basis of …
Sweet melody or jazz? Transcription around DNA double-strand breaks
Q Long, Z Liu, M Gullerova - Frontiers in Molecular Biosciences, 2021 - frontiersin.org
Genomic integrity is continuously threatened by thousands of endogenous and exogenous
damaging factors. To preserve genome stability, cells developed comprehensive DNA …
damaging factors. To preserve genome stability, cells developed comprehensive DNA …
Dissecting transcriptional amplification by MYC
Supraphysiological MYC levels are oncogenic. Originally considered a typical transcription
factor recruited to E-boxes (CACGTG), another theory posits MYC a global amplifier …
factor recruited to E-boxes (CACGTG), another theory posits MYC a global amplifier …
Evolution of fibroblasts in the lung metastatic microenvironment is driven by stage-specific transcriptional plasticity
O Shani, Y Raz, L Monteran, Y Scharff, O Levi-Galibov… - Elife, 2021 - elifesciences.org
Mortality from breast cancer is almost exclusively a result of tumor metastasis, and lungs are
one of the main metastatic sites. Cancer-associated fibroblasts are prominent players in the …
one of the main metastatic sites. Cancer-associated fibroblasts are prominent players in the …
NSD3S stabilizes MYC through hindering its interaction with FBXW7
V Gonzalez-Pecchi, AK Kwan, S Doyle… - Journal of Molecular …, 2020 - academic.oup.com
The MYC transcription factor plays a key role in cell growth control. Enhanced MYC protein
stability has been found to promote tumorigenesis. Thus, understanding how MYC stability is …
stability has been found to promote tumorigenesis. Thus, understanding how MYC stability is …
The pituitary tumour‐transforming gene 1/delta‐like homologue 1 pathway plays a key role in liver fibrogenesis
M Perramón, S Carvajal, V Reichenbach… - Liver …, 2022 - Wiley Online Library
Background and Aims PTTG1 is almost undetectable in adult livers but is highly expressed
in hepatocarcinoma. While little is known about its involvement in liver fibrosis, PTTG1 …
in hepatocarcinoma. While little is known about its involvement in liver fibrosis, PTTG1 …
Integrative omics for interactomes
Single-layer omics provide limited insight, whereas integrated multi-omics layers allow
understanding of their combined influence on the complex biological process. The …
understanding of their combined influence on the complex biological process. The …
Structural Comparison for Identifying Protein Hotspots Using PhiDsc Method
Introduction: Somatic mutations in cancer are caused by a complex interaction of many
starting and driving factors that work together to create a unique mutational landscape …
starting and driving factors that work together to create a unique mutational landscape …
Discovery of cancer driver genes based on nucleotide context
Many cancer genomes contain large numbers of somatic mutations, but few of these
mutations drive tumor development. Current approaches to identify cancer driver genes are …
mutations drive tumor development. Current approaches to identify cancer driver genes are …
PhiDsc: Protein functional mutation Identification by 3D Structure Comparison
MH Hoballa, C Eslahchi - bioRxiv, 2022 - biorxiv.org
Selective pressures that trigger cancer formation and progression shape the mutational
landscape of somatic mutations in cancer. Given the limits within which cells are regulated, a …
landscape of somatic mutations in cancer. Given the limits within which cells are regulated, a …