Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward

M Yao, S Zhang, Q Lu, X Chen, SY Zhang… - Molecular …, 2022 - Wiley Online Library
Vast global declines of freshwater and marine fish diversity and population abundance pose
serious threats to both ecosystem sustainability and human livelihoods. Environmental DNA …

Artificial intelligence and automated monitoring for assisting conservation of marine ecosystems: A perspective

EM Ditria, CA Buelow, M Gonzalez-Rivero… - Frontiers in Marine …, 2022 - frontiersin.org
Conservation of marine ecosystems has been highlighted as a priority to ensure a
sustainable future. Effective management requires data collection over large spatio-temporal …

Environmental DNA provides quantitative estimates of Pacific hake abundance and distribution in the open ocean

AO Shelton, A Ramón-Laca, A Wells… - … of the Royal …, 2022 - royalsocietypublishing.org
All species inevitably leave genetic traces in their environments, and the resulting
environmental DNA (eDNA) reflects the species present in a given habitat. It remains …

Advancing the protection of marine life through genomics

MJH Van Oppen, MA Coleman - PLoS Biology, 2022 - journals.plos.org
The rapid growth in genomic techniques provides the potential to transform how we protect,
manage, and conserve marine life. Further, solutions to boost the resilience of marine …

Environmental DNA methods for ecological monitoring and biodiversity assessment in estuaries

RP Nagarajan, M Bedwell, AE Holmes, T Sanches… - Estuaries and …, 2022 - Springer
Environmental DNA (eDNA) detection methods can complement traditional biomonitoring to
yield new ecological insights in aquatic systems. However, the conceptual and …

Comparing eDNA metabarcoding primers for assessing fish communities in a biodiverse estuary

G Kumar, AM Reaume, E Farrell, MR Gaither - PloS one, 2022 - journals.plos.org
Metabarcoding of environmental DNA is increasingly used for biodiversity assessments in
aquatic communities. The efficiency and outcome of these efforts are dependent upon either …

Quantitative monitoring of diverse fish communities on a large scale combining eDNA metabarcoding and qPCR

D Pont, P Meulenbroek, V Bammer… - Molecular Ecology …, 2023 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding is an effective method for studying fish
communities but allows only an estimation of relative species abundance (density/biomass) …

Toward a national eDNA strategy for the United States

RP Kelly, DM Lodge, KN Lee, S Theroux… - Environmental …, 2024 - Wiley Online Library
Environmental DNA (eDNA) data make it possible to measure and monitor biodiversity at
unprecedented resolution and scale. As use‐cases multiply and scientific consensus grows …

Experimental assessment of downstream environmental DNA patterns under variable fish biomass and river discharge rates

C Van Driessche, T Everts, S Neyrinck… - Environmental …, 2023 - Wiley Online Library
The development of environmental DNA (eDNA) methods toward implementation as a cost‐
effective, nonlethal tool for fish biomonitoring in lotic environments requires insights on the …

Extracting abundance information from DNA‐based data

M Luo, Y Ji, D Warton, DW Yu - Molecular Ecology Resources, 2023 - Wiley Online Library
The accurate extraction of species‐abundance information from DNA‐based data
(metabarcoding, metagenomics) could contribute usefully to diet analysis and food‐web …