The recent advances in automatic term extraction: A survey

HTH Tran, M Martinc, J Caporusso, A Doucet… - arxiv preprint arxiv …, 2023 - arxiv.org
Automatic term extraction (ATE) is a Natural Language Processing (NLP) task that eases the
effort of manually identifying terms from domain-specific corpora by providing a list of …

Biomedical ontologies in action: role in knowledge management, data integration and decision support

O Bodenreider - Yearbook of medical informatics, 2008 - thieme-connect.com
Objectives To provide typical examples of biomedical ontologies in action, emphasizing the
role played by biomedical ontologies in knowledge management, data integration and …

Accessing and integrating data and knowledge for biomedical research

A Burgun, O Bodenreider - Yearbook of medical informatics, 2008 - thieme-connect.com
Objectives To review the issues that have arisen with the advent of translational research in
terms of integration of data and knowledge, and survey current efforts to address these …

Exploring molecular pathways of triple-negative breast cancer

V Ossovskaya, Y Wang, A Budoff, Q Xu… - Genes & …, 2011 - journals.sagepub.com
Triple-negative breast cancer (TNBC) is an aggressive breast cancer subtype with a high
rate of proliferation and metastasis, as well as poor prognosis for advanced-stage disease …

A comparison of the functional modules identified from time course and static PPI network data

X Tang, J Wang, B Liu, M Li, G Chen, Y Pan - BMC bioinformatics, 2011 - Springer
Background Cellular systems are highly dynamic and responsive to cues from the
environment. Cellular function and response patterns to external stimuli are regulated by …

[PDF][PDF] Mantis: flexible and consensus-driven genome annotation

P Queirós, F Delogu, O Hickl, P May, P Wilmes - GigaScience, 2021 - academic.oup.com
Background The rapid development of the (meta-) omics fields has produced an
unprecedented amount of high-resolution and high-fidelity data. Through the use of these …

Ariadne's ChemEffect and Pathway Studio knowledge base

A Yuryev, E Kotelnikova, N Daraselia - Expert opinion on drug …, 2009 - Taylor & Francis
Importance of the field: Drug discovery and development is a very complex and costly
process. Understanding the detailed molecular mechanisms of a disease and drug actions …

The FEATURE framework for protein function annotation: modeling new functions, improving performance, and extending to novel applications

I Halperin, DS Glazer, S Wu, RB Altman - BMC genomics, 2008 - Springer
Structural genomics efforts contribute new protein structures that often lack significant
sequence and fold similarity to known proteins. Traditional sequence and structure-based …

Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology

A Özgür, Z **ang, DR Radev, Y He - Journal of biomedical semantics, 2011 - Springer
Background Interferon-gamma (IFN-γ) is vital in vaccine-induced immune defense against
bacterial and viral infections and tumor. Our recent study demonstrated the power of a …

Cross-species multiple environmental stress responses: An integrated approach to identify candidate genes for multiple stress tolerance in sorghum (Sorghum bicolor …

AA Woldesemayat, DM Modise, J Gemeildien… - PLoS …, 2018 - journals.plos.org
Background Crop response to the changing climate and unpredictable effects of global
warming with adverse conditions such as drought stress has brought concerns about food …