Host genotype and colonist arrival order jointly govern plant microbiome composition and function

DR Leopold, PE Busby - Current Biology, 2020 - cell.com
The composition of host-associated microbiomes can have important consequences for host
health and fitness [1–3]. Yet we still lack understanding of many fundamental processes that …

Integration of evidence across human and model organism studies: A meeting report

RHC Palmer, EC Johnson, H Won… - Genes, Brain and …, 2021 - Wiley Online Library
Abstract The National Institute on Drug Abuse and Joint Institute for Biological Sciences at
the Oak Ridge National Laboratory hosted a meeting attended by a diverse group of …

Genome‐wide association study and network analysis of in vitro transformation in Populus trichocarpa support key roles of diverse phytohormone pathways and …

MF Nagle, J Yuan, D Kaur, C Ma… - New …, 2024 - Wiley Online Library
Wide variation in amenability to transformation and regeneration (TR) among many plant
species and genotypes presents a challenge to the use of genetic engineering in research …

Genetic underpinnings of arthropod community distributions in Populus trichocarpa

SJ Simon, A Furches, H Chhetri, L Evans… - New …, 2024 - Wiley Online Library
Community genetics seeks to understand the mechanisms by which natural genetic
variation in heritable host phenotypes can encompass assemblages of organisms such as …

Genome-Wide Association Study of Wood Anatomical and Morphological Traits in Populus trichocarpa

HB Chhetri, A Furches, D Macaya-Sanz… - Frontiers in plant …, 2020 - frontiersin.org
To understand the genetic mechanisms underlying wood anatomical and morphological
traits in Populus trichocarpa, we used 869 unrelated genotypes from a common garden in …

A high-performance computing implementation of iterative random forest for the creation of predictive expression networks

A Cliff, J Romero, D Kainer, A Walker, A Furches… - Genes, 2019 - mdpi.com
As time progresses and technology improves, biological data sets are continuously
increasing in size. New methods and new implementations of existing methods are needed …

Systems genetic analysis of lignin biosynthesis in Populus tremula

M Luomaranta, C Grones, S Choudhary… - New …, 2024 - Wiley Online Library
The genetic control underlying natural variation in lignin content and composition in trees is
not fully understood. We performed a systems genetic analysis to uncover the genetic …

Validation of a metabolite–GWAS network for Populus trichocarpa family 1 UDP-glycosyltransferases

PMB Saint-Vincent, A Furches, S Galanie… - Frontiers in Plant …, 2023 - frontiersin.org
Metabolite genome-wide association studies (mGWASs) are increasingly used to discover
the genetic basis of target phenotypes in plants such as Populus trichocarpa, a biofuel …

PagGRF12a interacts with PagGIF1b to regulate secondary xylem development through modulating PagXND1a expression in Populus alba × P. glandulosa

J Wang, H Zhou, Y Zhao, C Jiang, J Li… - Journal of Integrative …, 2021 - Wiley Online Library
Growth‐regulating factors (GRFs) are important regulators of plant development and growth,
but their possible roles in xylem development in woody plants remain unclear. Here, we …

Xylem systems genetics analysis reveals a key regulator of lignin biosynthesis in Populus deltoides

KM Balmant, JD Noble, FC Alves, C Dervinis… - Genome …, 2020 - genome.cshlp.org
Despite the growing resources and tools for high-throughput characterization and analysis
of genomic information, the discovery of the genetic elements that regulate complex traits …