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Computational tools for aptamer identification and optimization
D Sun, M Sun, J Zhang, X Lin, Y Zhang, F Lin… - TrAC Trends in …, 2022 - Elsevier
Aptamers are single-stranded DNA or RNA oligonucleotides that can selectively bind to a
specific target. They are generally obtained by SELEX, but the procedure is challenging and …
specific target. They are generally obtained by SELEX, but the procedure is challenging and …
Recent trends in RNA informatics: a review of machine learning and deep learning for RNA secondary structure prediction and RNA drug discovery
Computational analysis of RNA sequences constitutes a crucial step in the field of RNA
biology. As in other domains of the life sciences, the incorporation of artificial intelligence …
biology. As in other domains of the life sciences, the incorporation of artificial intelligence …
Tuning hyperparameters of machine learning algorithms and deep neural networks using metaheuristics: A bioinformatics study on biomedical and biological cases
The performance of a model in machine learning problems highly depends on the dataset
and training algorithms. Choosing the right training algorithm can change the tale of a …
and training algorithms. Choosing the right training algorithm can change the tale of a …
PSCSO: Enhanced sand cat swarm optimization inspired by the political system to solve complex problems
Abstract The Sand Cat Swarm Optimization (SCSO) algorithm is a recently introduced
metaheuristic with balanced behavior in the exploration and exploitation phases. However, it …
metaheuristic with balanced behavior in the exploration and exploitation phases. However, it …
Recent advances in micro/nanomaterial-based aptamer selection strategies
Aptamers are artificial nucleic acid ligands that have been employed in various fundamental
studies and applications, such as biological analyses, disease diagnostics, targeted …
studies and applications, such as biological analyses, disease diagnostics, targeted …
High-throughput analysis of the interactions between viral proteins and host cell RNAs
RNA-protein interactions of a virus play a major role in the replication of RNA viruses. The
replication and transcription of these viruses take place in the cytoplasm of the host cell; …
replication and transcription of these viruses take place in the cytoplasm of the host cell; …
Synthetic repurposing of drugs against hypertension: a datamining method based on association rules and a novel discrete algorithm
Background Drug repurposing aims to detect the new therapeutic benefits of the existing
drugs and reduce the spent time and cost of the drug development projects. The synthetic …
drugs and reduce the spent time and cost of the drug development projects. The synthetic …
In silico design of novel aptamers utilizing a hybrid method of machine learning and genetic algorithm
Aptamers can be regarded as efficient substitutes for monoclonal antibodies in many
diagnostic and therapeutic applications. Due to the tedious and prohibitive nature of SELEX …
diagnostic and therapeutic applications. Due to the tedious and prohibitive nature of SELEX …
A knowledge-based protein-protein interaction inhibition (KPI) pipeline: an insight from drug repositioning for COVID-19 inhibition
The inhibition of protein-protein interactions (PPIs) by small molecules is an exciting drug
discovery strategy. Here, we aimed to develop a pipeline to identify candidate small …
discovery strategy. Here, we aimed to develop a pipeline to identify candidate small …
NaProGraph: Network Analyzer for Interactions between Nucleic Acids and Proteins
Background: Interactions of RNA and DNA with proteins are crucial for elucidating
intracellular processes in living organisms, diagnosing disorders, designing aptamer drugs …
intracellular processes in living organisms, diagnosing disorders, designing aptamer drugs …