The physiology of alternative splicing
Alternative splicing is a substantial contributor to the high complexity of transcriptomes of
multicellular eukaryotes. In this Review, we discuss the accumulated evidence that most of …
multicellular eukaryotes. In this Review, we discuss the accumulated evidence that most of …
Intron retention as a component of regulated gene expression programs
Intron retention has long been an exemplar of regulated splicing with case studies of
individual events serving as models that provided key mechanistic insights into the process …
individual events serving as models that provided key mechanistic insights into the process …
SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification
High-throughput sequencing of full-length transcripts using long reads has paved the way
for the discovery of thousands of novel transcripts, even in well-annotated mammalian …
for the discovery of thousands of novel transcripts, even in well-annotated mammalian …
The clothes make the mRNA: past and present trends in mRNP fashion
Throughout their lifetimes, messenger RNAs (mRNAs) associate with proteins to form
ribonucleoproteins (mRNPs). Since the discovery of the first mRNP component more than 40 …
ribonucleoproteins (mRNPs). Since the discovery of the first mRNP component more than 40 …
Tunable protein synthesis by transcript isoforms in human cells
Eukaryotic genes generate multiple RNA transcript isoforms though alternative transcription,
splicing, and polyadenylation. However, the relationship between human transcript diversity …
splicing, and polyadenylation. However, the relationship between human transcript diversity …
Alternative splicing and protein diversity: plants versus animals
Plants, unlike animals, exhibit a very high degree of plasticity in their growth and
development and employ diverse strategies to cope with the variations during diurnal cycles …
development and employ diverse strategies to cope with the variations during diurnal cycles …
The roles of RNA processing in translating genotype to phenotype
KS Manning, TA Cooper - Nature reviews Molecular cell biology, 2017 - nature.com
A goal of human genetics studies is to determine the mechanisms by which genetic variation
produces phenotypic differences that affect human health. Efforts in this respect have …
produces phenotypic differences that affect human health. Efforts in this respect have …
Enhanced protein isoform characterization through long-read proteogenomics
Background The detection of physiologically relevant protein isoforms encoded by the
human genome is critical to biomedicine. Mass spectrometry (MS)-based proteomics is the …
human genome is critical to biomedicine. Mass spectrometry (MS)-based proteomics is the …
Efficient and accurate quantitative profiling of alternative splicing patterns of any complexity on a laptop
Alternative splicing (AS) is a widespread process underlying the generation of transcriptomic
and proteomic diversity and is frequently misregulated in human disease. Accordingly, an …
and proteomic diversity and is frequently misregulated in human disease. Accordingly, an …
The RNAissance family: SR proteins as multifaceted regulators of gene expression
JM Howard, JR Sanford - Wiley Interdisciplinary Reviews: RNA, 2015 - Wiley Online Library
Serine and arginine‐rich (SR) proteins play multiple roles in the eukaryotic gene expression
pathway. Initially described as constitutive and alternative splicing factors, now it is clear that …
pathway. Initially described as constitutive and alternative splicing factors, now it is clear that …