Naturally occurring modified ribonucleosides

PJ McCown, A Ruszkowska, CN Kunkler… - Wiley …, 2020 - Wiley Online Library
The chemical identity of RNA molecules beyond the four standard ribonucleosides has
fascinated scientists since pseudouridine was characterized as the “fifth” ribonucleotide in …

The importance of being modified: the role of RNA modifications in translational fidelity

PF Agris, A Narendran, K Sarachan, VYP Väre… - The Enzymes, 2017 - Elsevier
The posttranscriptional modifications of tRNA's anticodon stem and loop (ASL) domain
represent a third level, a third code, to the accuracy and efficiency of translating mRNA …

Site-Specific Synthesis of N4-Acetylcytidine in RNA Reveals Physiological Duplex Stabilization

D Bartee, KD Nance, JL Meier - Journal of the American Chemical …, 2022 - ACS Publications
N 4-Acetylcytidine (ac4C) is a post-transcriptional modification of RNA that is conserved
across all domains of life. All characterized sites of ac4C in eukaryotic RNA occur in the …

Identification and Quantification of Modified Nucleosides in Saccharomyces cerevisiae mRNAs

M Tardu, JD Jones, RT Kennedy, Q Lin… - ACS chemical …, 2019 - ACS Publications
Post-transcriptional modifications to messenger RNAs (mRNAs) have the potential to alter
the biological function of this important class of biomolecules. The study of mRNA …

A molecular‐level perspective on the frequency, distribution, and consequences of messenger RNA modifications

JD Jones, J Monroe, KS Koutmou - Wiley Interdisciplinary …, 2020 - Wiley Online Library
Cells use chemical modifications to alter the sterics, charge, and conformations of large
biomolecules, modulating their biogenesis, function, and stability. Until recently post …

[HTML][HTML] Atranorin driven by nano materials SPION lead to ferroptosis of gastric cancer stem cells by weakening the mRNA 5-hydroxymethylcytidine modification of the …

Z Ni, X Nie, H Zhang, L Wang, Z Geng… - … Journal of Medical …, 2022 - ncbi.nlm.nih.gov
Gastric cancer is a highly malignant tumor. Gastric cancer stem cells (GCSCs) are the main
causes of drug resistance, metastasis, recurrence, and poor prognosis. As a secondary …

Calculations of pKa Values for a Series of Naturally Occurring Modified Nucleobases

EL Jones, AJ Mlotkowski, SP Hebert… - The Journal of …, 2022 - ACS Publications
Modified nucleobases are found in functionally important regions of RNA and are often
responsible for essential structural roles. Many of these nucleobase modifications are …

Single-Base Resolution Map** Reveals Distinct 5-Formylcytidine in Saccharomyces cerevisiae mRNAs

Y Wang, Z Chen, X Zhang, X Weng, J Deng… - ACS Chemical …, 2021 - ACS Publications
5-Formylcytidine (f5C) is one type of post-transcriptional RNA modification, which is known
at the wobble position of tRNA in mitochondria and essential for mitochondrial protein …

Liquid–liquid phase separation in diseases

X Zhang, L Yuan, W Zhang, Y Zhang, Q Wu, C Li… - MedComm, 2024 - Wiley Online Library
Liquid–liquid phase separation (LLPS), an emerging biophysical phenomenon, can
sequester molecules to implement physiological and pathological functions. LLPS …

5-Formylcytosine does not change the global structure of DNA

JS Hardwick, D Ptchelkine, AH El-Sagheer… - Nature structural & …, 2017 - nature.com
The mechanism by which the recently identified DNA modification 5-formylcytosine (fC) is
recognized by epigenetic writer and reader proteins is not known. Recently, an unusual …