Advances in dietary pattern analysis in nutritional epidemiology

CA Schulz, K Oluwagbemigun, U Nöthlings - European journal of nutrition, 2021 - Springer
Abstract Background and Purpose It used to be a common practice in the field of nutritional
epidemiology to analyze separate nutrients, foods, or food groups. However, in reality …

New molecular diagnostic approaches to bacterial infections and antibacterial resistance

EL Tsalik, RA Bonomo… - Annual review of medicine, 2018 - annualreviews.org
Recent advances in the field of infectious disease diagnostics have given rise to a number of
host-and pathogen-centered diagnostic approaches. Most diagnostic approaches in …

A new Bayesian factor analysis method improves detection of genes and biological processes affected by perturbations in single-cell CRISPR screening

Y Zhou, K Luo, L Liang, M Chen, X He - Nature Methods, 2023 - nature.com
Clustered regularly interspaced short palindromic repeats (CRISPR) screening coupled with
single-cell RNA sequencing has emerged as a powerful tool to characterize the effects of …

LFMM 2: fast and accurate inference of gene-environment associations in genome-wide studies

K Caye, B Jumentier, J Lepeule… - Molecular biology and …, 2019 - academic.oup.com
Gene-environment association (GEA) studies are essential to understand the past and
ongoing adaptations of organisms to their environment, but those studies are complicated by …

Large covariance estimation by thresholding principal orthogonal complements

J Fan, Y Liao, M Mincheva - Journal of the Royal Statistical …, 2013 - academic.oup.com
The paper deals with the estimation of a high dimensional covariance with a conditional
sparsity structure and fast diverging eigenvalues. By assuming a sparse error covariance …

Testing for associations between loci and environmental gradients using latent factor mixed models

E Frichot, SD Schoville, G Bouchard… - Molecular biology and …, 2013 - academic.oup.com
Adaptation to local environments often occurs through natural selection acting on a large
number of loci, each having a weak phenotypic effect. One way to detect these loci is to …

Identification of molecular subtypes of gastric cancer with different responses to PI3-kinase inhibitors and 5-fluorouracil

Z Lei, IB Tan, K Das, N Deng, H Zouridis, S Pattison… - Gastroenterology, 2013 - Elsevier
Background & Aims Almost all gastric cancers are adenocarcinomas, which have
considerable heterogeneity among patients. We sought to identify subtypes of gastric …

Model-based clustering

PD McNicholas - Journal of Classification, 2016 - Springer
The notion of defining a cluster as a component in a mixture model was put forth by
Tiedeman in 1955; since then, the use of mixture models for clustering has grown into an …

[LIVRE][B] Handbook of regression methods

DS Young - 2018 - taylorfrancis.com
Handbook of Regression Methods concisely covers numerous traditional, contemporary,
and nonstandard regression methods. The handbook provides a broad overview of …

[LIVRE][B] Time series: modeling, computation, and inference

R Prado, M West - 2010 - taylorfrancis.com
Focusing on Bayesian approaches and computations using simulation-based methods for
inference, Time Series: Modeling, Computation, and Inference integrates mainstream …