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Unveiling microbial diversity: harnessing long-read sequencing technology
Long-read sequencing has recently transformed metagenomics, enhancing strain-level
pathogen characterization, enabling accurate and complete metagenome-assembled …
pathogen characterization, enabling accurate and complete metagenome-assembled …
Sequencing and characterizing short tandem repeats in the human genome
Short tandem repeats (STRs) are highly polymorphic sequences throughout the human
genome that are composed of repeated copies of a 1–6-bp motif. Over 1 million variable …
genome that are composed of repeated copies of a 1–6-bp motif. Over 1 million variable …
A pangenome reference of 36 Chinese populations
Human genomics is witnessing an ongoing paradigm shift from a single reference sequence
to a pangenome form, but populations of Asian ancestry are underrepresented. Here we …
to a pangenome form, but populations of Asian ancestry are underrepresented. Here we …
Identification of errors in draft genome assemblies at single-nucleotide resolution for quality assessment and improvement
Assembly of a high-quality genome is important for downstream comparative and functional
genomic studies. However, most tools for genome assembly assessment only give …
genomic studies. However, most tools for genome assembly assessment only give …
[HTML][HTML] A near-complete assembly of an Arabidopsis thaliana genome
X Hou, D Wang, Z Cheng, Y Wang, Y Jiao - Molecular plant, 2022 - cell.com
The genome sequence of Arabidopsis thaliana, a widely adopted model species, has
greatly expedited plant molecular biology research. Over 20 years after the first release of …
greatly expedited plant molecular biology research. Over 20 years after the first release of …
A near-complete cucumber reference genome assembly and Cucumber-DB, a multi-omics database
Dear Editor, Cucumber (Cucumis sativus L.) is a key vegetable crop and an essential model
for genetics and genomics research in Cucurbitaceae, especially in studies on plant sex …
for genetics and genomics research in Cucurbitaceae, especially in studies on plant sex …
A proposed metric set for evaluation of genome assembly quality
Quality control is essential for genome assemblies; however, a consensus has yet to be
reached on what metrics should be adopted for the evaluation of assembly quality. N50 is …
reached on what metrics should be adopted for the evaluation of assembly quality. N50 is …
Genome assembly in the telomere-to-telomere era
Genome sequences largely determine the biology and encode the history of an organism,
and de novo assembly—the process of reconstructing the genome sequence of an organism …
and de novo assembly—the process of reconstructing the genome sequence of an organism …
North American pitseed goosefoot (Chenopodium berlandieri) is a genetic resource to improve Andean quinoa (C. quinoa)
Pitseed goosefoot (Chenopodium berlandieri) is a free-living North American member of an
allotetraploid complex that includes the Andean pseudocereal quinoa (C. quinoa). Like …
allotetraploid complex that includes the Andean pseudocereal quinoa (C. quinoa). Like …
W chromosome sequences of two bombycid moths provide an insight into the origin of Fem
J Lee, T Fujimoto, K Yamaguchi… - Molecular …, 2024 - Wiley Online Library
Fem is a W‐linked gene that encodes a piRNA precursor, and its product, Fem piRNA, is a
master factor of female determination in Bombyx mori. Fem has low similarity to any known …
master factor of female determination in Bombyx mori. Fem has low similarity to any known …