[HTML][HTML] The molecular genetics of crop domestication
JF Doebley, BS Gaut, BD Smith - Cell, 2006 - cell.com
Ten thousand years ago human societies around the globe began to transition from hunting
and gathering to agriculture. By 4000 years ago, ancient peoples had completed the …
and gathering to agriculture. By 4000 years ago, ancient peoples had completed the …
Linkage disequilibrium—understanding the evolutionary past and map** the medical future
M Slatkin - Nature Reviews Genetics, 2008 - nature.com
Linkage disequilibrium—the nonrandom association of alleles at different loci—is a sensitive
indicator of the population genetic forces that structure a genome. Because of the explosive …
indicator of the population genetic forces that structure a genome. Because of the explosive …
Efficient ancestry and mutation simulation with msprime 1.0
Stochastic simulation is a key tool in population genetics, since the models involved are
often analytically intractable and simulation is usually the only way of obtaining ground-truth …
often analytically intractable and simulation is usually the only way of obtaining ground-truth …
Approximate Bayesian computation (ABC) in practice
Understanding the forces that influence natural variation within and among populations has
been a major objective of evolutionary biologists for decades. Motivated by the growth in …
been a major objective of evolutionary biologists for decades. Motivated by the growth in …
Approximate Bayesian computation in evolution and ecology
MA Beaumont - Annual review of ecology, evolution, and …, 2010 - annualreviews.org
In the past 10years a statistical technique, approximate Bayesian computation (ABC), has
been developed that can be used to infer parameters and choose between models in the …
been developed that can be used to infer parameters and choose between models in the …
Sequential monte carlo without likelihoods
Recent new methods in Bayesian simulation have provided ways of evaluating posterior
distributions in the presence of analytically or computationally intractable likelihood …
distributions in the presence of analytically or computationally intractable likelihood …
Recent Selective Sweeps in North American Drosophila melanogaster Show Signatures of Soft Sweeps
Adaptation from standing genetic variation or recurrent de novo mutation in large
populations should commonly generate soft rather than hard selective sweeps. In contrast to …
populations should commonly generate soft rather than hard selective sweeps. In contrast to …
Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits
A central challenge in evolutionary biology is to identify genes underlying ecologically
important traits and describe the fitness consequences of naturally occurring variation at …
important traits and describe the fitness consequences of naturally occurring variation at …
Using genomic data to infer historic population dynamics of nonmodel organisms
Genome sequence data are now being routinely obtained from many nonmodel organisms.
These data contain a wealth of information about the demographic history of the populations …
These data contain a wealth of information about the demographic history of the populations …
Deep learning for population genetic inference
S Sheehan, YS Song - PLoS computational biology, 2016 - journals.plos.org
Given genomic variation data from multiple individuals, computing the likelihood of complex
population genetic models is often infeasible. To circumvent this problem, we introduce a …
population genetic models is often infeasible. To circumvent this problem, we introduce a …