Transcriptional landscape of SARS-CoV-2 infection dismantles pathogenic pathways activated by the virus, proposes unique sex-specific differences and predicts …

P Fagone, R Ciurleo, SD Lombardo, C Iacobello… - Autoimmunity …, 2020 - Elsevier
The emergence of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
disease (COVID-19) has posed a serious threat to global health. As no specific therapeutics …

Regulatory roles of tRNA-derived RNA fragments in human pathophysiology

KK Pandey, D Madhry, YSR Kumar, S Malvankar… - … Therapy-Nucleic Acids, 2021 - cell.com
Hundreds of tRNA genes and pseudogenes are encoded by the human genome. tRNAs are
the second most abundant type of RNA in the cell. Advancement in deep-sequencing …

Immunophenoty** of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19

JS Lee, S Park, HW Jeong, JY Ahn, SJ Choi… - Science …, 2020 - science.org
Although most severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)–infected
individuals experience mild coronavirus disease 2019 (COVID-19), some patients suffer …

Cigarette smoke exposure and inflammatory signaling increase the expression of the SARS-CoV-2 receptor ACE2 in the respiratory tract

JC Smith, EL Sausville, V Girish, ML Yuan… - Developmental cell, 2020 - cell.com
The factors mediating fatal SARS-CoV-2 infections are poorly understood. Here, we show
that cigarette smoke causes a dose-dependent upregulation of angiotensin converting …

Toll-like receptor 3 signaling via TRIF contributes to a protective innate immune response to severe acute respiratory syndrome coronavirus infection

AL Totura, A Whitmore, S Agnihothram, A Schäfer… - MBio, 2015 - Am Soc Microbiol
Toll-like receptors (TLRs) are sensors that recognize molecular patterns from viruses,
bacteria, and fungi to initiate innate immune responses to invading pathogens. The …

Large-scale microbiome data integration enables robust biomarker identification

L **ao, F Zhang, F Zhao - Nature Computational Science, 2022 - nature.com
The close association between gut microbiota dysbiosis and human diseases is being
increasingly recognized. However, contradictory results are frequently reported, as …

Hypergraph models of biological networks to identify genes critical to pathogenic viral response

S Feng, E Heath, B Jefferson, C Joslyn, H Kvinge… - BMC …, 2021 - Springer
Background Representing biological networks as graphs is a powerful approach to reveal
underlying patterns, signatures, and critical components from high-throughput biomolecular …

SARS-CoV-2 switches 'on'MAPK and NFκB signaling via the reduction of nuclear DUSP1 and DUSP5 expression

S Goel, F Saheb Sharif-Askari… - Frontiers in …, 2021 - frontiersin.org
Mitogen-activated protein kinases (MAPK) and NF-kappaB (NF-κB) pathway regulate many
cellular processes and are essential for immune cells function. Their activity is controlled by …

Recent aspects on the pathogenesis mechanism, animal models and novel therapeutic interventions for Middle East respiratory syndrome coronavirus infections

S Skariyachan, SB Challapilli, S Packirisamy… - Frontiers in …, 2019 - frontiersin.org
Middle East Respiratory Syndrome Coronavirus (MERS-CoV) is an emerging zoonotic virus
considered as one of the major public threat with a total number of 2 298 laboratory …

Interferon-induced transmembrane protein (IFITM3) is upregulated explicitly in SARS-CoV-2 infected lung epithelial cells

MY Hachim, S Al Heialy, IY Hachim, R Halwani… - Frontiers in …, 2020 - frontiersin.org
Current guidelines for COVID-19 management recommend the utilization of various
repurposed drugs. Despite ongoing research toward the development of a vaccine against …