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Ancient DNA analysis
Although the first ancient DNA molecules were extracted more than three decades ago, the
first ancient nuclear genomes could only be characterized after high-throughput sequencing …
first ancient nuclear genomes could only be characterized after high-throughput sequencing …
Invertebrate immune systems–not homogeneous, not simple, not well understood
The approximate 30 extant invertebrate phyla have diversified along separate evolutionary
trajectories for hundreds of millions of years. Although recent work understandably has …
trajectories for hundreds of millions of years. Although recent work understandably has …
Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender
Droplet-based single-cell assays, including single-cell RNA sequencing (scRNA-seq),
single-nucleus RNA sequencing (snRNA-seq) and cellular indexing of transcriptomes and …
single-nucleus RNA sequencing (snRNA-seq) and cellular indexing of transcriptomes and …
Inexpensive multiplexed library preparation for megabase-sized genomes
Whole-genome sequencing has become an indispensible tool of modern biology. However,
the cost of sample preparation relative to the cost of sequencing remains high, especially for …
the cost of sample preparation relative to the cost of sequencing remains high, especially for …
Primer and platform effects on 16S rRNA tag sequencing
Sequencing of 16S rRNA gene tags is a popular method for profiling and comparing
microbial communities. The protocols and methods used, however, vary considerably with …
microbial communities. The protocols and methods used, however, vary considerably with …
UCHIME improves sensitivity and speed of chimera detection
Motivation: Chimeric DNA sequences often form during polymerase chain reaction
amplification, especially when sequencing single regions (eg 16S rRNA or fungal Internal …
amplification, especially when sequencing single regions (eg 16S rRNA or fungal Internal …
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
The advent of next generation sequencing has coincided with a growth in interest in using
these approaches to better understand the role of the structure and function of the microbial …
these approaches to better understand the role of the structure and function of the microbial …
[HTML][HTML] Brain injury induces specific changes in the caecal microbiota of mice via altered autonomic activity and mucoprotein production
Intestinal microbiota are critical for health with changes associated with diverse human
diseases. Research suggests that altered intestinal microbiota can profoundly affect brain …
diseases. Research suggests that altered intestinal microbiota can profoundly affect brain …
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
Bacterial diversity among environmental samples is commonly assessed with PCR-
amplified 16S rRNA gene (16S) sequences. Perceived diversity, however, can be influenced …
amplified 16S rRNA gene (16S) sequences. Perceived diversity, however, can be influenced …
Manual and automated preparation of single-stranded DNA libraries for the sequencing of DNA from ancient biological remains and other sources of highly degraded …
MT Gansauge, A Aximu-Petri, S Nagel, M Meyer - Nature Protocols, 2020 - nature.com
It has been shown that highly fragmented DNA is most efficiently converted into DNA
libraries for sequencing if both strands of the DNA fragments are processed independently …
libraries for sequencing if both strands of the DNA fragments are processed independently …