Biclustering algorithms for biological data analysis: a survey

SC Madeira, AL Oliveira - IEEE/ACM transactions on …, 2004 - ieeexplore.ieee.org
A large number of clustering approaches have been proposed for the analysis of gene
expression data obtained from microarray experiments. However, the results from the …

Advantages and limitations of current network inference methods

R De Smet, K Marchal - Nature Reviews Microbiology, 2010 - nature.com
Network inference, which is the reconstruction of biological networks from high-throughput
data, can provide valuable information about the regulation of gene expression in cells …

Molecular signatures of antibody responses derived from a systems biology study of five human vaccines

S Li, N Rouphael, S Duraisingham… - Nature …, 2014 - nature.com
Many vaccines induce protective immunity via antibodies. Systems biology approaches
have been used to determine signatures that can be used to predict vaccine-induced …

A comprehensive evaluation of module detection methods for gene expression data

W Saelens, R Cannoodt, Y Saeys - Nature communications, 2018 - nature.com
A critical step in the analysis of large genome-wide gene expression datasets is the use of
module detection methods to group genes into co-expression modules. Because of …

Clustering high-dimensional data: A survey on subspace clustering, pattern-based clustering, and correlation clustering

HP Kriegel, P Kröger, A Zimek - … on knowledge discovery from data (tkdd …, 2009 - dl.acm.org
As a prolific research area in data mining, subspace clustering and related problems
induced a vast quantity of proposed solutions. However, many publications compare a new …

[图书][B] Handbook of mixture analysis

S Fruhwirth-Schnatter, G Celeux, CP Robert - 2019 - books.google.com
Mixture models have been around for over 150 years, and they are found in many branches
of statistical modelling, as a versatile and multifaceted tool. They can be applied to a wide …

A systematic comparison and evaluation of biclustering methods for gene expression data

A Prelić, S Bleuler, P Zimmermann, A Wille… - …, 2006 - academic.oup.com
Motivation: In recent years, there have been various efforts to overcome the limitations of
standard clustering approaches for the analysis of gene expression data by grou** genes …

[PDF][PDF] Discovering statistically significant biclusters in gene expression data

A Tanay, R Sharan, R Shamir - Bioinformatics, 2002 - acgt.cs.tau.ac.il
In gene expression data, a bicluster is a subset of the genes exhibiting consistent patterns
over a subset of the conditions. We propose a new method to detect significant biclusters in …

De novo discovery of mutated driver pathways in cancer

F Vandin, E Upfal, BJ Raphael - Genome research, 2012 - genome.cshlp.org
Next-generation DNA sequencing technologies are enabling genome-wide measurements
of somatic mutations in large numbers of cancer patients. A major challenge in the …

[HTML][HTML] Biclustering on expression data: A review

B Pontes, R Giráldez, JS Aguilar-Ruiz - Journal of biomedical informatics, 2015 - Elsevier
Biclustering has become a popular technique for the study of gene expression data,
especially for discovering functionally related gene sets under different subsets of …