Biclustering algorithms for biological data analysis: a survey
A large number of clustering approaches have been proposed for the analysis of gene
expression data obtained from microarray experiments. However, the results from the …
expression data obtained from microarray experiments. However, the results from the …
Advantages and limitations of current network inference methods
R De Smet, K Marchal - Nature Reviews Microbiology, 2010 - nature.com
Network inference, which is the reconstruction of biological networks from high-throughput
data, can provide valuable information about the regulation of gene expression in cells …
data, can provide valuable information about the regulation of gene expression in cells …
Molecular signatures of antibody responses derived from a systems biology study of five human vaccines
Many vaccines induce protective immunity via antibodies. Systems biology approaches
have been used to determine signatures that can be used to predict vaccine-induced …
have been used to determine signatures that can be used to predict vaccine-induced …
A comprehensive evaluation of module detection methods for gene expression data
A critical step in the analysis of large genome-wide gene expression datasets is the use of
module detection methods to group genes into co-expression modules. Because of …
module detection methods to group genes into co-expression modules. Because of …
Clustering high-dimensional data: A survey on subspace clustering, pattern-based clustering, and correlation clustering
As a prolific research area in data mining, subspace clustering and related problems
induced a vast quantity of proposed solutions. However, many publications compare a new …
induced a vast quantity of proposed solutions. However, many publications compare a new …
[图书][B] Handbook of mixture analysis
Mixture models have been around for over 150 years, and they are found in many branches
of statistical modelling, as a versatile and multifaceted tool. They can be applied to a wide …
of statistical modelling, as a versatile and multifaceted tool. They can be applied to a wide …
A systematic comparison and evaluation of biclustering methods for gene expression data
Motivation: In recent years, there have been various efforts to overcome the limitations of
standard clustering approaches for the analysis of gene expression data by grou** genes …
standard clustering approaches for the analysis of gene expression data by grou** genes …
[PDF][PDF] Discovering statistically significant biclusters in gene expression data
In gene expression data, a bicluster is a subset of the genes exhibiting consistent patterns
over a subset of the conditions. We propose a new method to detect significant biclusters in …
over a subset of the conditions. We propose a new method to detect significant biclusters in …
De novo discovery of mutated driver pathways in cancer
Next-generation DNA sequencing technologies are enabling genome-wide measurements
of somatic mutations in large numbers of cancer patients. A major challenge in the …
of somatic mutations in large numbers of cancer patients. A major challenge in the …
[HTML][HTML] Biclustering on expression data: A review
Biclustering has become a popular technique for the study of gene expression data,
especially for discovering functionally related gene sets under different subsets of …
especially for discovering functionally related gene sets under different subsets of …