Effects of selection at linked sites on patterns of genetic variability

B Charlesworth, JD Jensen - Annual review of ecology …, 2021 - annualreviews.org
Patterns of variation and evolution at a given site in a genome can be strongly influenced by
the effects of selection at genetically linked sites. In particular, the recombination rates of …

Selective sweeps

W Stephan - Genetics, 2019 - academic.oup.com
For almost 20 years, many inference methods have been developed to detect selective
sweeps and localize the targets of directional selection in the genome. These methods are …

A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)

SD Schoville, YH Chen, MN Andersson, JB Benoit… - Scientific reports, 2018 - nature.com
The Colorado potato beetle is one of the most challenging agricultural pests to manage. It
has shown a spectacular ability to adapt to a variety of solanaceaeous plants and variable …

The importance of the neutral theory in 1968 and 50 years on: a response to Kern and Hahn 2018

JD Jensen, BA Payseur, W Stephan, CF Aquadro… - …, 2019 - academic.oup.com
A recent article reassessing the Neutral Theory of Molecular Evolution claims that it is no
longer as important as is widely believed. The authors argue that “the neutral theory was …

Genome resequencing reveals rapid, repeated evolution in the Colorado potato beetle

B Pélissié, YH Chen, ZP Cohen… - Molecular Biology …, 2022 - academic.oup.com
Insecticide resistance and rapid pest evolution threatens food security and the development
of sustainable agricultural practices, yet the evolutionary mechanisms that allow pests to …

Toward an evolutionarily appropriate null model: jointly inferring demography and purifying selection

P Johri, B Charlesworth, JD Jensen - Genetics, 2020 - academic.oup.com
The relative evolutionary roles of adaptive and non-adaptive processes remain a central
question in population genetics. Resolution of this debate has been difficult as an …

How chromosomal inversions reorient the evolutionary process

EL Berdan, NH Barton, R Butlin… - Journal of …, 2023 - Wiley Online Library
Inversions are structural mutations that reverse the sequence of a chromosome segment
and reduce the effective rate of recombination in the heterozygous state. They play a major …

Detecting positive selection in the genome

TR Booker, BC Jackson, PD Keightley - BMC biology, 2017 - Springer
Population geneticists have long sought to understand the contribution of natural selection
to molecular evolution. A variety of approaches have been proposed that use population …

The determinants of genetic diversity in butterflies

A Mackintosh, DR Laetsch, A Hayward… - Nature …, 2019 - nature.com
Under the neutral theory, genetic diversity is expected to increase with population size.
While comparative analyses have consistently failed to find strong relationships between …

The impact of purifying and background selection on the inference of population history: problems and prospects

P Johri, K Riall, H Becher, L Excoffier… - Molecular biology …, 2021 - academic.oup.com
Current procedures for inferring population history generally assume complete neutrality—
that is, they neglect both direct selection and the effects of selection on linked sites. We here …