Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics

SK Longo, MG Guo, AL Ji, PA Khavari - Nature Reviews Genetics, 2021 - nature.com
Single-cell RNA sequencing (scRNA-seq) identifies cell subpopulations within tissue but
does not capture their spatial distribution nor reveal local networks of intercellular …

Overview of multiplex immunohistochemistry/immunofluorescence techniques in the era of cancer immunotherapy

WCC Tan, SN Nerurkar, HY Cai, HHM Ng… - Cancer …, 2020 - Wiley Online Library
Conventional immunohistochemistry (IHC) is a widely used diagnostic technique in tissue
pathology. However, this technique is associated with a number of limitations, including high …

Core–shell nanoparticle-enhanced Raman spectroscopy

JF Li, YJ Zhang, SY Ding, R Panneerselvam… - Chemical …, 2017 - ACS Publications
Core–shell nanoparticles are at the leading edge of the hot research topics and offer a wide
range of applications in optics, biomedicine, environmental science, materials, catalysis …

Multiplexed protein maps link subcellular organization to cellular states

G Gut, MD Herrmann, L Pelkmans - Science, 2018 - science.org
INTRODUCTION Obtaining multiplexed molecular readouts from large numbers of single
cells in situ is an important technological goal to facilitate scientific discoveries in basic and …

Future of digital assays to resolve clinical heterogeneity of single extracellular vesicles

RTT Morales, J Ko - ACS nano, 2022 - ACS Publications
Extracellular vesicles (EVs) are complex lipid membrane vehicles with variable expressions
of molecular cargo, composed of diverse subpopulations that participate in the intercellular …

Spatial map** of protein composition and tissue organization: a primer for multiplexed antibody-based imaging

JW Hickey, EK Neumann, AJ Radtke, JM Camarillo… - Nature …, 2022 - nature.com
Tissues and organs are composed of distinct cell types that must operate in concert to
perform physiological functions. Efforts to create high-dimensional biomarker catalogs of …

Quantum dots: bright and versatile in vitro and in vivo fluorescence imaging biosensors

KD Wegner, N Hildebrandt - Chemical Society Reviews, 2015 - pubs.rsc.org
Semiconductor quantum dots (QDs) have become important fluorescent probes for in vitro
and in vivo bioimaging research. Their nanoparticle surfaces for versatile bioconjugation …

Toward biocompatible semiconductor quantum dots: from biosynthesis and bioconjugation to biomedical application

J Zhou, Y Yang, C Zhang - Chemical reviews, 2015 - ACS Publications
The understanding of biological systems at the molecular scale is increasingly reliant on the
capability of tracking miscellaneous biomolecules and their events with improved spatial …

Light-driven transformable optical agent with adaptive functions for boosting cancer surgery outcomes

J Qi, C Chen, X Zhang, X Hu, S Ji, RTK Kwok… - Nature …, 2018 - nature.com
Fluorescence and photoacoustic imaging have different advantages in cancer diagnosis;
however, combining effects in one agent normally requires a trade-off as the mechanisms …

Highly multiplexed imaging of single cells using a high-throughput cyclic immunofluorescence method

JR Lin, M Fallahi-Sichani, PK Sorger - Nature communications, 2015 - nature.com
Single-cell analysis reveals aspects of cellular physiology not evident from population-
based studies, particularly in the case of highly multiplexed methods such as mass …