Microbial communities and their enzymes facilitate degradation of recalcitrant polymers in anaerobic digestion

EM Blair, KL Dickson, MA O'Malley - Current Opinion in Microbiology, 2021 - Elsevier
Highlights•Microbial consortia are tools to break down recalcitrant carbon sources.•Several
carbohydrate active enzymes are known to hydrolyze biomass.•Emerging techniques are …

Revisiting the current and emerging concepts of postharvest fresh fruit and vegetable pathology for next‐generation antifungal technologies

GL Ngolong Ngea, Q Yang, M Xu… - … Reviews in Food …, 2024 - Wiley Online Library
Fungal infections of fresh fruits and vegetables (FFVs) can lead to safety problems, including
consumer poisoning by mycotoxins. Various strategies exist to control fungal infections of …

SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes

E Martínez-García, S Fraile, E Algar… - Nucleic Acids …, 2023 - academic.oup.com
Abstract The SEVA platform (https://seva-plasmids. com) was launched one decade ago,
both as a database (DB) and as a physical repository of plasmid vectors for genetic analysis …

Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics

M Baranwal, RL Clark, J Thompson, Z Sun, AO Hero… - Elife, 2022 - elifesciences.org
Predicting the dynamics and functions of microbiomes constructed from the bottom-up is a
key challenge in exploiting them to our benefit. Current models based on ecological theory …

Guided by the principles of microbiome engineering: Accomplishments and perspectives for environmental use

H Hu, M Wang, Y Huang, Z Xu, P Xu, Y Nie, H Tang - Mlife, 2022 - Wiley Online Library
Although the accomplishments of microbiome engineering highlight its significance for the
targeted manipulation of microbial communities, knowledge and technical gaps still limit the …

[HTML][HTML] Investigating biofilms: advanced methods for comprehending microbial behavior and antibiotic resistance

A Almatroudi - Frontiers in Bioscience-Landmark, 2024 - imrpress.com
Biofilms, which consist of microorganisms enclosed in an extracellular polymeric material
(EPS), hold immense importance in the fields of environmental research, industry, and …

[HTML][HTML] Microbiome engineering: a promising approach to improve coral health

J Li, Q Yang, J Dong, M Sweet, Y Zhang, C Liu… - Engineering, 2023 - Elsevier
The world's coral reefs are threatened by the cumulative impacts of global climate change
and local stressors. Driven largely by a desire to understand the interactions between corals …

Vitamin interdependencies predicted by metagenomics-informed network analyses and validated in microbial community microcosms

T Hessler, RJ Huddy, R Sachdeva, S Lei… - Nature …, 2023 - nature.com
Metagenomic or metabarcoding data are often used to predict microbial interactions in
complex communities, but these predictions are rarely explored experimentally. Here, we …

Assembly of functional microbial ecosystems: from molecular circuits to communities

S Wu, Y Zhou, L Dai, A Yang… - FEMS Microbiology …, 2024 - academic.oup.com
Microbes compete and cooperate with each other via a variety of chemicals and circuits.
Recently, to decipher, simulate, or reconstruct microbial communities, many researches …

Engineering temporal dynamics in microbial communities

C Ronda, HH Wang - Current opinion in microbiology, 2022 - Elsevier
Highlights•The ecology and physiology of microbial communities are governed by their
spatiotemporal dynamics.•Precision modulation of the microbiome can help to elucidate the …