Viral metagenomics

RA Edwards, F Rohwer - Nature Reviews Microbiology, 2005 - nature.com
Viruses, most of which infect microorganisms, are the most abundant biological entities on
the planet. Identifying and measuring the community dynamics of viruses in the environment …

[HTML][HTML] Phages of Staphylococcus aureus and their impact on host evolution

G **a, C Wolz - Infection, Genetics and Evolution, 2014 - Elsevier
Most of the dissimilarity between Staphylococcus aureus strains is due to the presence of
mobile genetic elements such as bacteriophages or pathogenicity islands. These elements …

Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks

H Bin Jang, B Bolduc, O Zablocki, JH Kuhn… - Nature …, 2019 - nature.com
Microbiomes from every environment contain a myriad of uncultivated archaeal and
bacterial viruses, but studying these viruses is hampered by the lack of a universal, scalable …

VICTOR: genome-based phylogeny and classification of prokaryotic viruses

JP Meier-Kolthoff, M Göker - Bioinformatics, 2017 - academic.oup.com
Motivation Bacterial and archaeal viruses are crucial for global biogeochemical cycles and
might well be game-changing therapeutic agents in the fight against multi-resistant …

How to name and classify your phage: an informal guide

EM Adriaenssens, JR Brister - Viruses, 2017 - mdpi.com
With this informal guide, we try to assist both new and experienced phage researchers
through two important stages that follow phage discovery; that is, naming and classification …

Bacteriophages of lactic acid bacteria and their impact on milk fermentations

JE Garneau, S Moineau - Microbial cell factories, 2011 - Springer
Every biotechnology process that relies on the use of bacteria to make a product or to
overproduce a molecule may, at some time, struggle with the presence of virulent phages …

[BOOK][B] Philosophy of microbiology

M O'Malley - 2014 - books.google.com
Microbes and microbiology are seldom encountered in philosophical accounts of the life
sciences. Although microbiology is a well-established science and microbes the basis of life …

Bacteriophages and dairy fermentations

MB Marcó, S Moineau, A Quiberoni - Bacteriophage, 2012 - Taylor & Francis
This review highlights the main strategies available to control phage infection during large-
scale milk fermentation by lactic acid bacteria. The topics that are emphasized include the …

Biodiversity and classification of lactococcal phages

H Deveau, SJ Labrie, MC Chopin… - Applied and …, 2006 - Am Soc Microbiol
For this study, an in-depth review of the classification of Lactococcus lactis phages was
performed. Reference phages as well as unclassified phages from international collections …

Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy

P Aiewsakun, EM Adriaenssens… - Journal of General …, 2018 - microbiologyresearch.org
Genome Relationship Applied to Virus Taxonomy (GRAViTy) is a genetics-based tool that
computes sequence relatedness between viruses. Composite generalized Jaccard (CGJ) …