Positional motif analysis reveals the extent of specificity of protein-RNA interactions observed by CLIP
Background Crosslinking and immunoprecipitation (CLIP) is a method used to identify in
vivo RNA–protein binding sites on a transcriptome-wide scale. With the increasing amounts …
vivo RNA–protein binding sites on a transcriptome-wide scale. With the increasing amounts …
m6A-ELISA, a simple method for quantifying N6-methyladenosine from mRNA populations
N6-methyladenosine (m6A) is a widely studied and abundant RNA modification. The m6A
mark regulates the fate of RNAs in various ways, which in turn drives changes in cell …
mark regulates the fate of RNAs in various ways, which in turn drives changes in cell …
Towards in silico CLIP-seq: predicting protein-RNA interaction via sequence-to-signal learning
We present RBPNet, a novel deep learning method, which predicts CLIP-seq crosslink count
distribution from RNA sequence at single-nucleotide resolution. By training on up to a million …
distribution from RNA sequence at single-nucleotide resolution. By training on up to a million …
Kar4, the yeast homolog of METTL14, is required for mRNA m6A methylation and meiosis
ZM Park, AJ Sporer, K Kraft, KK Lum, E Blackman… - PLoS …, 2023 - journals.plos.org
KAR4, the yeast homolog of the mammalian mRNA N6A-methyltransferase complex
component METTL14, is required for two disparate developmental programs in …
component METTL14, is required for two disparate developmental programs in …
[HTML][HTML] Defining the mechanisms and properties of post-transcriptional regulatory disordered regions by high-throughput functional profiling
JH Lobel, NT Ingolia - bioRxiv, 2024 - ncbi.nlm.nih.gov
Disordered regions within RNA binding proteins are required to control mRNA decay and
protein synthesis. To understand how these disordered regions modulate gene expression …
protein synthesis. To understand how these disordered regions modulate gene expression …
Computational studies of RNA modification-dependent RNA binding protein networks
C Capitanchik - 2022 - discovery.ucl.ac.uk
The covalent modification of RNA nucleotides is a powerful layer of post-transcriptional
control of gene expression across the tree of life. Historically, only abundant modifications …
control of gene expression across the tree of life. Historically, only abundant modifications …