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Best practices for single-cell analysis across modalities
Recent advances in single-cell technologies have enabled high-throughput molecular
profiling of cells across modalities and locations. Single-cell transcriptomics data can now …
profiling of cells across modalities and locations. Single-cell transcriptomics data can now …
Spatial components of molecular tissue biology
Methods for profiling RNA and protein expression in a spatially resolved manner are rapidly
evolving, making it possible to comprehensively characterize cells and tissues in health and …
evolving, making it possible to comprehensively characterize cells and tissues in health and …
Medial Arterial Calcification: JACC State-of-the-Art Review
Medial arterial calcification (MAC) is a chronic systemic vascular disorder distinct from
atherosclerosis that is frequently but not always associated with diabetes mellitus, chronic …
atherosclerosis that is frequently but not always associated with diabetes mellitus, chronic …
Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data with SpaTalk
Spatially resolved transcriptomics provides genetic information in space toward elucidation
of the spatial architecture in intact organs and the spatially resolved cell-cell …
of the spatial architecture in intact organs and the spatially resolved cell-cell …
Multiplex protein imaging in tumour biology
Tissue imaging has become much more colourful in the past decade. Advances in both
experimental and analytical methods now make it possible to image protein markers in …
experimental and analytical methods now make it possible to image protein markers in …
[HTML][HTML] Computational solutions for spatial transcriptomics
Transcriptome level expression data connected to the spatial organization of the cells and
molecules would allow a comprehensive understanding of how gene expression is …
molecules would allow a comprehensive understanding of how gene expression is …
Application of machine learning in spatial proteomics
Spatial proteomics is an interdisciplinary field that investigates the localization and dynamics
of proteins, and it has gained extensive attention in recent years, especially the subcellular …
of proteins, and it has gained extensive attention in recent years, especially the subcellular …
Gene count normalization in single-cell imaging-based spatially resolved transcriptomics
Background Recent advances in imaging-based spatially resolved transcriptomics (im-SRT)
technologies now enable high-throughput profiling of targeted genes and their locations in …
technologies now enable high-throughput profiling of targeted genes and their locations in …
Bayesian modeling of spatial molecular profiling data via Gaussian process
Motivation The location, timing and abundance of gene expression (both mRNA and
proteins) within a tissue define the molecular mechanisms of cell functions. Recent …
proteins) within a tissue define the molecular mechanisms of cell functions. Recent …
stAA: adversarial graph autoencoder for spatial clustering task of spatially resolved transcriptomics
With the development of spatially resolved transcriptomics technologies, it is now possible to
explore the gene expression profiles of single cells while preserving their spatial context …
explore the gene expression profiles of single cells while preserving their spatial context …