[HTML][HTML] Fluorescent multifunctional organic nanoparticles for drug delivery and bioimaging: a tutorial review

G Vargas-Nadal, M Köber, A Nsamela, F Terenziani… - Pharmaceutics, 2022 - mdpi.com
Fluorescent organic nanoparticles (FONs) are a large family of nanostructures constituted by
organic components that emit light in different spectral regions upon excitation, due to the …

Computer simulation studies of self-assembling macromolecules

W Shinoda, R DeVane, ML Klein - Current Opinion in Structural Biology, 2012 - Elsevier
Coarse-grained (CG) molecular models are now widely used to understand the structure
and functionality of macromolecular self-assembling systems. In the last few years …

Strong scaling of general-purpose molecular dynamics simulations on GPUs

J Glaser, TD Nguyen, JA Anderson, P Lui… - Computer Physics …, 2015 - Elsevier
We describe a highly optimized implementation of MPI domain decomposition in a GPU-
enabled, general-purpose molecular dynamics code, HOOMD-blue (Anderson and Glotzer …

HOOMD-blue: A Python package for high-performance molecular dynamics and hard particle Monte Carlo simulations

JA Anderson, J Glaser, SC Glotzer - Computational Materials Science, 2020 - Elsevier
HOOMD-blue is a particle simulation engine designed for nano-and colloidal-scale
molecular dynamics and hard particle Monte Carlo simulations. It has been actively …

Molecular simulations in macromolecular science

D Xu, HX Wan, XR Yao, J Li, LT Yan - Chinese Journal of Polymer Science, 2023 - Springer
Molecular simulations are now an essential part of modern chemistry and physics,
especially for the investigation of macromolecules. They have evolved into mature …

Ab initio nonadiabatic dynamics of multichromophore complexes: A scalable graphical-processing-unit-accelerated exciton framework

A Sisto, DR Glowacki, TJ Martinez - Accounts of Chemical …, 2014 - ACS Publications
Conspectus Although advances in computer hardware and algorithms tuned for novel
computer architectures are leading to significant increases in the size and time scale for …

Predicting surfactant phase behavior with a molecularly informed field theory

K Shen, M Nguyen, N Sherck, B Yoo, S Köhler… - Journal of Colloid and …, 2023 - Elsevier
Hypothesis The computational study of surfactants and self-assembly is challenging
because 1) models need to reflect chemistry-specific interactions, and 2) self-assembled …

Translation of chemical structure into dissipative particle dynamics parameters for simulation of surfactant self-assembly

E Lavagnini, JL Cook, PB Warren… - The Journal of Physical …, 2021 - ACS Publications
Dissipative particle dynamics (DPD) can be used to simulate the self-assembly properties of
surfactants in aqueous solutions, but in order to simulate a new compound, a large number …

[HTML][HTML] Determination of the critical micelle concentration in simulations of surfactant systems

AP Santos, AZ Panagiotopoulos - The Journal of chemical physics, 2016 - pubs.aip.org
Alternative methods for determining the critical micelle concentration (cmc) are investigated
using canonical and grand canonical Monte Carlo simulations of a lattice surfactant model …

In silico-based experiments on mechanistic interactions between several intestinal permeation enhancers with a lipid Bilayer model

R Kneiszl, S Hossain, P Larsson - Molecular pharmaceutics, 2021 - ACS Publications
Oral administration of drugs is generally considered convenient and patient-friendly.
However, oral administration of biological drugs exhibits low oral bioavailability (BA) due to …