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Mechanisms of enhancer action: the known and the unknown
A Panigrahi, BW O'Malley - Genome biology, 2021 - Springer
Differential gene expression mechanisms ensure cellular differentiation and plasticity to
shape ontogenetic and phylogenetic diversity of cell types. A key regulator of differential …
shape ontogenetic and phylogenetic diversity of cell types. A key regulator of differential …
A new era in functional genomics screens
L Przybyla, LA Gilbert - Nature Reviews Genetics, 2022 - nature.com
The past 25 years of genomics research first revealed which genes are encoded by the
human genome and then a detailed catalogue of human genome variation associated with …
human genome and then a detailed catalogue of human genome variation associated with …
Functional dissection of human cardiac enhancers and noncoding de novo variants in congenital heart disease
Rare coding mutations cause∼ 45% of congenital heart disease (CHD). Noncoding
mutations that perturb cis-regulatory elements (CREs) likely contribute to the remaining …
mutations that perturb cis-regulatory elements (CREs) likely contribute to the remaining …
CRISPR technologies for precise epigenome editing
The epigenome involves a complex set of cellular processes governing genomic activity.
Dissecting this complexity necessitates the development of tools capable of specifically …
Dissecting this complexity necessitates the development of tools capable of specifically …
Enhancers in disease: molecular basis and emerging treatment strategies
A Claringbould, JB Zaugg - Trends in molecular medicine, 2021 - cell.com
Enhancers are genomic sequences that play a key role in regulating tissue-specific gene
expression levels. An increasing number of diseases are linked to impaired enhancer …
expression levels. An increasing number of diseases are linked to impaired enhancer …
Genome-scale pan-cancer interrogation of lncRNA dependencies using CasRx
JJ Montero, R Trozzo, M Sugden, R Öllinger, A Belka… - Nature …, 2024 - nature.com
Although long noncoding RNAs (lncRNAs) dominate the transcriptome, their functions are
largely unexplored. The extensive overlap of lncRNAs with coding and regulatory …
largely unexplored. The extensive overlap of lncRNAs with coding and regulatory …
Targeted Perturb-seq enables genome-scale genetic screens in single cells
D Schraivogel, AR Gschwind, JH Milbank, DR Leonce… - Nature …, 2020 - nature.com
The transcriptome contains rich information on molecular, cellular and organismal
phenotypes. However, experimental and statistical limitations constrain sensitivity and …
phenotypes. However, experimental and statistical limitations constrain sensitivity and …
CRISPR screens for functional interrogation of immunity
CRISPR-based technologies represent a major breakthrough in biomedical science as they
offer a powerful platform for unbiased screening and functional genomics in various fields …
offer a powerful platform for unbiased screening and functional genomics in various fields …
[HTML][HTML] Systematic epigenome editing captures the context-dependent instructive function of chromatin modifications
C Policarpi, M Munafò, S Tsagkris, V Carlini… - Nature Genetics, 2024 - nature.com
Chromatin modifications are linked with regulating patterns of gene expression, but their
causal role and context-dependent impact on transcription remains unresolved. Here we …
causal role and context-dependent impact on transcription remains unresolved. Here we …
Engineered CRISPR-Cas12a for higher-order combinatorial chromatin perturbations
CCS Hsiung, CM Wilson, NA Sambold, R Dai… - Nature …, 2024 - nature.com
Multiplexed genetic perturbations are critical for testing functional interactions among coding
or non-coding genetic elements. Compared to double-stranded DNA cutting, repressive …
or non-coding genetic elements. Compared to double-stranded DNA cutting, repressive …