[HTML][HTML] HomBlocks: a multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching

G Bi, Y Mao, Q **ng, M Cao - Genomics, 2018 - Elsevier
Organelle phylogenomic analysis requires precisely constructed multi-gene alignment
matrices concatenated by pre-aligned single gene datasets. For non-bioinformaticians, it …

Morphological Characteristics, Nutrients, and Bioactive Compounds of Zizania latifolia, and Health Benefits of Its Seeds

N Yan, Y Du, X Liu, C Chu, J Shi, H Zhang, Y Liu… - Molecules, 2018 - mdpi.com
Zizania latifolia (tribe Oryzeae Dum., subfamily Oryzoideae Care, family Gramineae) is
native to East Asian countries. The seeds of Z. latifolia (Chinese wild rice) have been …

[HTML][HTML] A 250 plastome phylogeny of the grass family (Poaceae): topological support under different data partitions

JM Saarela, SV Burke, WP Wysocki, MD Barrett… - PeerJ, 2018 - peerj.com
The systematics of grasses has advanced through applications of plastome phylogenomics,
although studies have been largely limited to subfamilies or other subgroups of Poaceae …

Chloroplast genome sequence of Chongming lima bean (Phaseolus lunatus L.) and comparative analyses with other legume chloroplast genomes

S Tian, P Lu, Z Zhang, JQ Wu, H Zhang, H Shen - BMC genomics, 2021 - Springer
Abstract Background Lima bean (Phaseolus lunatus L.) is a member of subfamily
Phaseolinae belonging to the family Leguminosae and an important source of plant proteins …

Comparative plastome analyses and genomic resource development in wild rice (Zizania spp., Poaceae) using genome skimming data

R Lu, M Chen, Y Feng, N Yuan, Y Zhang, M Cao… - Industrial Crops and …, 2022 - Elsevier
Abstract Wild rice (Zizania spp.), a major aquatic crop of North America and East Asia, has
been globally recognized for its superior nutritional and health benefits. However, genomic …

Domestication, breeding, omics research, and important genes of Zizania latifolia and Zizania palustris

YN **e, QQ Qi, WH Li, YL Li, Y Zhang… - Frontiers in Plant …, 2023 - frontiersin.org
Wild rice (Zizania spp.), an aquatic grass belonging to the subfamily Gramineae, has a high
economic value. Zizania provides food (such as grains and vegetables), a habitat for wild …

Comparative analyses of 3,654 plastid genomes unravel insights into evolutionary dynamics and phylogenetic discordance of green plants

T Yang, SK Sahu, L Yang, Y Liu, W Mu, X Liu… - Frontiers in Plant …, 2022 - frontiersin.org
The plastid organelle is essential for many vital cellular processes and the growth and
development of plants. The availability of a large number of complete plastid genomes could …

Analysis of Complete Chloroplast Genome: Structure, Phylogenetic Relationships of Galega orientalis and Evolutionary Inference of Galegeae

J Feng, Y **ong, X Su, T Liu, Y **ong, J Zhao, X Lei… - Genes, 2023 - mdpi.com
Galega orientalis, a leguminous herb in the Fabaceae family, is an ecologically and
economically important species widely cultivated for its strong stress resistance and high …

The Complete Chloroplast Genome of Trichopus zeylanicus, And Phylogenetic Analysis with Dioscoreales

VC Biju, S PR, S Vijayan, VS Rajan, A Sasi… - The plant …, 2019 - Wiley Online Library
Core Ideas We presents the first chloroplast genome from the genus Trichopus.
Comparative analysis revealed that the IR regions are more conserved than the SC regions …

De novo full-length transcriptome analysis of two ecotypes of Phragmites australis (swamp reed and dune reed) provides new insights into the transcriptomic …

J Cui, T Qiu, L Li, S Cui - BMC genomics, 2023 - Springer
Background The extremely harsh environment of the desert is changing dramatically every
moment, and the rapid adaptive stress response in the short term requires enormous energy …