Structure‐Based Drug Discovery with Deep Learning

R Özçelik, D van Tilborg, J Jiménez‐Luna… - …, 2023 - Wiley Online Library
Artificial intelligence (AI) in the form of deep learning has promise for drug discovery and
chemical biology, for example, to predict protein structure and molecular bioactivity, plan …

Designing drugs and chemical probes with the dualsteric approach

J Zha, J He, C Wu, M Zhang, X Liu… - Chemical Society Reviews, 2023 - pubs.rsc.org
Traditionally, drugs are monovalent, targeting only one site on the protein surface. This
includes orthosteric and allosteric drugs, which bind the protein at orthosteric and allosteric …

G protein-coupled receptors (GPCRs): advances in structures, mechanisms, and drug discovery

M Zhang, T Chen, X Lu, X Lan, Z Chen… - Signal Transduction and …, 2024 - nature.com
G protein-coupled receptors (GPCRs), the largest family of human membrane proteins and
an important class of drug targets, play a role in maintaining numerous physiological …

Mechanistic insights into the long-range allosteric regulation of KRAS via neurofibromatosis type 1 (NF1) scaffold upon SPRED1 loading

M Li, Y Wang, J Fan, H Zhuang, Y Liu, D Ji… - Journal of Molecular …, 2022 - Elsevier
Allosteric regulation is the most direct and efficient way of regulating protein function,
wherein proteins transmit the perturbations at one site to another distinct functional site …

AlloReverse: multiscale understanding among hierarchical allosteric regulations

J Zha, Q Li, X Liu, W Lin, T Wang, J Wei… - Nucleic acids …, 2023 - academic.oup.com
Increasing data in allostery are requiring analysis of coupling relationships among different
allosteric sites on a single protein. Here, based on our previous efforts on reversed allosteric …

Progressive computational approaches to facilitate decryption of allosteric mechanism and drug discovery

X Lu, X Lan, S Lu, J Zhang - Current Opinion in Structural Biology, 2023 - Elsevier
Allostery is a ubiquitous biological phenomenon where perturbation at topologically distal
areas of a protein serves as a trigger to fine-tune the orthosteric site and thus regulate …

Harnessing reversed allosteric communication: a novel strategy for allosteric drug discovery

J Fan, Y Liu, R Kong, D Ni, Z Yu, S Lu… - Journal of Medicinal …, 2021 - ACS Publications
Allostery is a fundamental and extensive mechanism of intramolecular signal transmission.
Allosteric drugs possess several unique pharmacological advantages over traditional …

[HTML][HTML] Allosteric communication and signal transduction in proteins

N Wu, M Barahona, SN Yaliraki - Current Opinion in Structural Biology, 2024 - Elsevier
Allostery is one of the cornerstones of biological function, as it plays a fundamental role in
regulating protein activity. The modelling of allostery has gradually moved from a …

Molecular dynamics simulations establish the molecular basis for the broad allostery hotspot distributions in the tetracycline repressor

Y Yuan, J Deng, Q Cui - Journal of the American Chemical …, 2022 - ACS Publications
It is imperative to identify the network of residues essential to the allosteric coupling for the
purpose of rationally engineering allostery in proteins. Deep mutational scanning analysis …

Green and efficient one-pot three-component synthesis of novel drug-like furo [2, 3-d] pyrimidines as potential active site inhibitors and putative allosteric hotspots …

H Mousavi, B Zeynizadeh, M Rimaz - Bioorganic Chemistry, 2023 - Elsevier
In this paper, an environmentally benign, convenient, and efficient one-pot three-component
reaction has been developed for the regioselective synthesis of novel 5-aroyl (or …