Comparative studies on resampling techniques in machine learning and deep learning models for drug-target interaction prediction

AK Azlim Khan, NH Ahamed Hassain Malim - Molecules, 2023 - mdpi.com
The prediction of drug-target interactions (DTIs) is a vital step in drug discovery. The success
of machine learning and deep learning methods in accurately predicting DTIs plays a huge …

CCL-DTI: contributing the contrastive loss in drug–target interaction prediction

A Dehghan, K Abbasi, P Razzaghi, H Banadkuki… - BMC …, 2024 - Springer
Abstract Background The Drug–Target Interaction (DTI) prediction uses a drug molecule and
a protein sequence as inputs to predict the binding affinity value. In recent years, deep …

DeepBindGCN: Integrating molecular vector representation with graph convolutional neural networks for protein–ligand interaction prediction

H Zhang, KM Saravanan, JZH Zhang - Molecules, 2023 - mdpi.com
The core of large-scale drug virtual screening is to select the binders accurately and
efficiently with high affinity from large libraries of small molecules in which non-binders are …

[HTML][HTML] Applications of deep learning for drug discovery systems with bigdata

Y Matsuzaka, R Yashiro - BioMedInformatics, 2022 - mdpi.com
The adoption of “artificial intelligence (AI) in drug discovery”, where AI is used in the process
of pharmaceutical research and development, is progressing. By using the ability to process …

BindingSite-AugmentedDTA: enabling a next-generation pipeline for interpretable prediction models in drug repurposing

N Yousefi, M Yazdani-Jahromi, A Tayebi… - Briefings in …, 2023 - academic.oup.com
While research into drug–target interaction (DTI) prediction is fairly mature, generalizability
and interpretability are not always addressed in the existing works in this field. In this paper …

Predicting endocrine disruption using conformal prediction–a prioritization strategy to identify hazardous chemicals with confidence

M Sapounidou, U Norinder… - Chemical Research in …, 2022 - ACS Publications
Receptor-mediated molecular initiating events (MIEs) and their relevance in endocrine
activity (EA) have been highlighted in literature. More than 15 receptors have been …

Identifying potential drug-target interactions based on ensemble deep learning

L Zhou, Y Wang, L Peng, Z Li, X Luo - Frontiers in Aging Neuroscience, 2023 - frontiersin.org
Introduction Drug-target interaction prediction is one important step in drug research and
development. Experimental methods are time consuming and laborious. Methods In this …

PHCDTI: A multichannel parallel high-order feature crossover model for DTIs prediction

Y Ye, X Zhang, M Kong, H Hu, Z Xu - Expert Systems with Applications, 2024 - Elsevier
The exploration of non-covalent interactions between drugs and proteins (NCIs) has
significantly improved the performance of drug–target interactions (DTIs) prediction models …

Fair Bilevel Neural Network (FairBiNN): On Balancing fairness and accuracy via Stackelberg Equilibrium

M Yazdani-Jahromi… - Advances in …, 2025 - proceedings.neurips.cc
The persistent challenge of bias in machine learning models necessitates robust solutions to
ensure parity and equal treatment across diverse groups, particularly in classification tasks …

Application of artificial intelligence and machine learning in drug repurposing.

SK Ghandikota, AG Jegga - Progress in Molecular Biology and …, 2024 - europepmc.org
The purpose of drug repurposing is to leverage previously approved drugs for a particular
disease indication and apply them to another disease. It can be seen as a faster and more …