'Evolutionary poker': an agent‐based model of interactome emergence and epistasis tested against Lenski's long‐term E. coli experiments

RS Root‐Bernstein, MI Bernstein - The Journal of Physiology, 2024 - Wiley Online Library
A simple agent‐based model is presented that produces results matching the experimental
data found by Lenski's group for≤ 50,000 generations of Escherichia coli bacteria under …

Genome-wide association and genotype by environment interactions for growth traits in US Red Angus cattle

JL Smith, ML Wilson, SM Nilson, TN Rowan… - BMC genomics, 2022 - Springer
Background Genotypic information produced from single nucleotide polymorphism (SNP)
arrays has routinely been used to identify genomic regions associated with complex traits in …

Comparative neurogenetics of dog behavior complements efforts towards human neuropsychiatric genetics

K Morrill, F Chen, E Karlsson - Human Genetics, 2023 - Springer
Domestic dogs display a wide array of heritable behaviors that have intermediate genetic
complexity thanks to a long history of human-influenced selection. Comparative genetics in …

Stacked kinship CNN vs. GBLUP for genomic predictions of additive and complex continuous phenotypes

N Nazzicari, F Biscarini - Scientific Reports, 2022 - nature.com
Deep learning is impacting many fields of data science with often spectacular results.
However, its application to whole-genome predictions in plant and animal science or in …

Genome-wide association analyses identify genotype-by-environment interactions of growth traits in Simmental cattle

CU Braz, TN Rowan, RD Schnabel, JE Decker - Scientific reports, 2021 - nature.com
Understanding genotype-by-environment interactions (G× E) is crucial to understand
environmental adaptation in mammals and improve the sustainability of agricultural …

Genotype-by-environment interactions and local adaptation shape selection in the US National Chip Processing Trial

HI Agha, JB Endelman, J Chitwood-Brown… - Theoretical and Applied …, 2024 - Springer
Key message We find evidence of selection for local adaptation and extensive genotype-by-
environment interaction in the potato National Chip Processing Trial (NCPT). Abstract We …

Genome-wide association study of eigenvectors provides genetic insights into selective breeding for tomato metabolites

J Yang, B Liang, Y Zhang, Y Liu, S Wang, Q Yang… - BMC biology, 2022 - Springer
Background Long-term domestication and intensive breeding of crop plants aim to establish
traits desirable for human needs, and characteristics related to yield, disease resistance …

Genome wide association study of beef traits in local alpine breed reveals the diversity of the pathways involved and the role of time stratification

E Mancin, B Tuliozi, S Pegolo, C Sartori… - Frontiers in …, 2022 - frontiersin.org
Knowledge of the genetic architecture of key growth and beef traits in livestock species has
greatly improved worldwide thanks to genome-wide association studies (GWAS), which …

[HTML][HTML] Assessment of genetic diversity, inbreeding, and collection completeness of Jersey bulls in the US National Animal Germplasm Program

K Srikanth, MA Jaafar, M Neupane, HB Zaabza… - Journal of Dairy …, 2024 - Elsevier
Genomic selection and extensive use of a few elite bulls through artificial insemination are
leading to reduced genetic diversity in Jersey cattle. Conservation of genetic diversity …

Genomic responses to climatic challenges in beef cattle: A review

D Colombi, F Perini, S Bettini, S Mastrangelo… - Animal …, 2024 - Wiley Online Library
Climate change is a major concern for the near future and for livestock breeding. Cattle
breeding, due to its greenhouse gas emissions, is one of the most implicated industries …