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'Evolutionary poker': an agent‐based model of interactome emergence and epistasis tested against Lenski's long‐term E. coli experiments
RS Root‐Bernstein, MI Bernstein - The Journal of Physiology, 2024 - Wiley Online Library
A simple agent‐based model is presented that produces results matching the experimental
data found by Lenski's group for≤ 50,000 generations of Escherichia coli bacteria under …
data found by Lenski's group for≤ 50,000 generations of Escherichia coli bacteria under …
Genome-wide association and genotype by environment interactions for growth traits in US Red Angus cattle
Background Genotypic information produced from single nucleotide polymorphism (SNP)
arrays has routinely been used to identify genomic regions associated with complex traits in …
arrays has routinely been used to identify genomic regions associated with complex traits in …
Comparative neurogenetics of dog behavior complements efforts towards human neuropsychiatric genetics
Domestic dogs display a wide array of heritable behaviors that have intermediate genetic
complexity thanks to a long history of human-influenced selection. Comparative genetics in …
complexity thanks to a long history of human-influenced selection. Comparative genetics in …
Stacked kinship CNN vs. GBLUP for genomic predictions of additive and complex continuous phenotypes
Deep learning is impacting many fields of data science with often spectacular results.
However, its application to whole-genome predictions in plant and animal science or in …
However, its application to whole-genome predictions in plant and animal science or in …
Genome-wide association analyses identify genotype-by-environment interactions of growth traits in Simmental cattle
Understanding genotype-by-environment interactions (G× E) is crucial to understand
environmental adaptation in mammals and improve the sustainability of agricultural …
environmental adaptation in mammals and improve the sustainability of agricultural …
Genotype-by-environment interactions and local adaptation shape selection in the US National Chip Processing Trial
Key message We find evidence of selection for local adaptation and extensive genotype-by-
environment interaction in the potato National Chip Processing Trial (NCPT). Abstract We …
environment interaction in the potato National Chip Processing Trial (NCPT). Abstract We …
Genome-wide association study of eigenvectors provides genetic insights into selective breeding for tomato metabolites
J Yang, B Liang, Y Zhang, Y Liu, S Wang, Q Yang… - BMC biology, 2022 - Springer
Background Long-term domestication and intensive breeding of crop plants aim to establish
traits desirable for human needs, and characteristics related to yield, disease resistance …
traits desirable for human needs, and characteristics related to yield, disease resistance …
Genome wide association study of beef traits in local alpine breed reveals the diversity of the pathways involved and the role of time stratification
Knowledge of the genetic architecture of key growth and beef traits in livestock species has
greatly improved worldwide thanks to genome-wide association studies (GWAS), which …
greatly improved worldwide thanks to genome-wide association studies (GWAS), which …
[HTML][HTML] Assessment of genetic diversity, inbreeding, and collection completeness of Jersey bulls in the US National Animal Germplasm Program
Genomic selection and extensive use of a few elite bulls through artificial insemination are
leading to reduced genetic diversity in Jersey cattle. Conservation of genetic diversity …
leading to reduced genetic diversity in Jersey cattle. Conservation of genetic diversity …
Genomic responses to climatic challenges in beef cattle: A review
D Colombi, F Perini, S Bettini, S Mastrangelo… - Animal …, 2024 - Wiley Online Library
Climate change is a major concern for the near future and for livestock breeding. Cattle
breeding, due to its greenhouse gas emissions, is one of the most implicated industries …
breeding, due to its greenhouse gas emissions, is one of the most implicated industries …