Purely covalent molecular cages and containers for guest encapsulation

G Montà-González, F Sancenón… - Chemical …, 2022 - ACS Publications
Cage compounds offer unique binding pockets similar to enzyme-binding sites, which can
be customized in terms of size, shape, and functional groups to point toward the cavity and …

Design and applications of water-soluble coordination cages

EG Percástegui, TK Ronson, JR Nitschke - Chemical Reviews, 2020 - ACS Publications
Compartmentalization of the aqueous space within a cell is necessary for life. In similar
fashion to the nanometer-scale compartments in living systems, synthetic water-soluble …

Sequence-based drug design as a concept in computational drug design

L Chen, Z Fan, J Chang, R Yang, H Hou, H Guo… - Nature …, 2023 - nature.com
Drug development based on target proteins has been a successful approach in recent
decades. However, the conventional structure-based drug design (SBDD) pipeline is a …

Catalytic reactions within the cavity of coordination cages

Y Fang, JA Powell, E Li, Q Wang, Z Perry… - Chemical Society …, 2019 - pubs.rsc.org
Natural enzymes catalyze reactions in their substrate-binding cavities, exhibiting high
specificity and efficiency. In an effort to mimic the structure and functionality of enzymes …

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

AS Rifaioglu, H Atas, MJ Martin… - Briefings in …, 2019 - academic.oup.com
The identification of interactions between drugs/compounds and their targets is crucial for
the development of new drugs. In vitro screening experiments (ie bioassays) are frequently …

Mutation of GmAITR Genes by CRISPR/Cas9 Genome Editing Results in Enhanced Salinity Stress Tolerance in Soybean

T Wang, H Xun, W Wang, X Ding, H Tian… - Frontiers in plant …, 2021 - frontiersin.org
Breeding of stress-tolerant plants is able to improve crop yield under stress conditions,
whereas CRISPR/Cas9 genome editing has been shown to be an efficient way for molecular …

fastDRH: a webserver to predict and analyze protein–ligand complexes based on molecular docking and MM/PB (GB) SA computation

Z Wang, H Pan, H Sun, Y Kang, H Liu… - Briefings in …, 2022 - academic.oup.com
Predicting the native or near-native binding pose of a small molecule within a protein
binding pocket is an extremely important task in structure-based drug design, especially in …

Full-length P2X7 structures reveal how palmitoylation prevents channel desensitization

AE McCarthy, C Yoshioka, SE Mansoor - Cell, 2019 - cell.com
P2X receptors are trimeric, non-selective cation channels activated by extracellular ATP. The
P2X 7 receptor subtype is a pharmacological target because of involvement in apoptotic …

Molecular geometry pretraining with se (3)-invariant denoising distance matching

S Liu, H Guo, J Tang - arxiv preprint arxiv:2206.13602, 2022 - arxiv.org
Molecular representation pretraining is critical in various applications for drug and material
discovery due to the limited number of labeled molecules, and most existing work focuses …

Symmetry-informed geometric representation for molecules, proteins, and crystalline materials

S Liu, Y Li, Z Li, Z Zheng, C Duan… - Advances in neural …, 2024 - proceedings.neurips.cc
Artificial intelligence for scientific discovery has recently generated significant interest within
the machine learning and scientific communities, particularly in the domains of chemistry …