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Utility of B-factors in protein science: interpreting rigidity, flexibility, and internal motion and engineering thermostability
Z Sun, Q Liu, G Qu, Y Feng, MT Reetz - Chemical reviews, 2019 - ACS Publications
The term B-factor, sometimes called the Debye–Waller factor, temperature factor, or atomic
displacement parameter, is used in protein crystallography to describe the attenuation of X …
displacement parameter, is used in protein crystallography to describe the attenuation of X …
Integrating enzyme immobilization and protein engineering: An alternative path for the development of novel and improved industrial biocatalysts
Enzyme immobilization often achieves reusable biocatalysts with improved operational
stability and solvent resistance. However, these modifications are generally associated with …
stability and solvent resistance. However, these modifications are generally associated with …
Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently
The amino acid sequence of a protein affects both its structure and its function. Thus, the
ability to modify the sequence, and hence the structure and activity, of individual proteins in …
ability to modify the sequence, and hence the structure and activity, of individual proteins in …
Two strategies to engineer flexible loops for improved enzyme thermostability
Flexible sites are potential targets for engineering the stability of enzymes. Nevertheless, the
success rate of the rigidifying flexible sites (RFS) strategy is still low due to a limited …
success rate of the rigidifying flexible sites (RFS) strategy is still low due to a limited …
Hot spots-making directed evolution easier
Directed evolution has emerged as a powerful strategy to engineer various properties of
proteins. Traditional methods to construct libraries such as error-prone PCR and DNA …
proteins. Traditional methods to construct libraries such as error-prone PCR and DNA …
Directed evolution of unspecific peroxygenase from Agrocybe aegerita
Unspecific peroxygenase (UPO) represents a new type of heme-thiolate enzyme with self-
sufficient mono (per) oxygenase activity and many potential applications in organic …
sufficient mono (per) oxygenase activity and many potential applications in organic …
P450-catalyzed regio-and diastereoselective steroid hydroxylation: efficient directed evolution enabled by mutability landsca**
Cytochrome P450 monooxygenases play a crucial role in the biosynthesis of many natural
products and in the human metabolism of numerous pharmaceuticals. This has inspired …
products and in the human metabolism of numerous pharmaceuticals. This has inspired …
Computational design of enzymes for biotechnological applications
Enzymes are the natural catalysts that execute biochemical reactions upholding life. Their
natural effectiveness has been fine-tuned as a result of millions of years of natural evolution …
natural effectiveness has been fine-tuned as a result of millions of years of natural evolution …
Directed evolution 2.0: improving and deciphering enzyme properties
F Cheng, L Zhu, U Schwaneberg - Chemical Communications, 2015 - pubs.rsc.org
Directed evolution has matured to a routinely applied algorithm to tailor enzyme properties
to meet the demands in various applications. In order to free directed enzyme evolution from …
to meet the demands in various applications. In order to free directed enzyme evolution from …
Enzyme engineering: reaching the maximal catalytic efficiency peak
Highlights•Optimization plateaus are common when engineering enzymes for higher
catalytic efficiency.•These plateaus relate to fundamental properties of evolutionary fitness …
catalytic efficiency.•These plateaus relate to fundamental properties of evolutionary fitness …