Utility of B-factors in protein science: interpreting rigidity, flexibility, and internal motion and engineering thermostability

Z Sun, Q Liu, G Qu, Y Feng, MT Reetz - Chemical reviews, 2019 - ACS Publications
The term B-factor, sometimes called the Debye–Waller factor, temperature factor, or atomic
displacement parameter, is used in protein crystallography to describe the attenuation of X …

Integrating enzyme immobilization and protein engineering: An alternative path for the development of novel and improved industrial biocatalysts

C Bernal, K Rodriguez, R Martinez - Biotechnology Advances, 2018 - Elsevier
Enzyme immobilization often achieves reusable biocatalysts with improved operational
stability and solvent resistance. However, these modifications are generally associated with …

Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently

A Currin, N Swainston, PJ Day, DB Kell - Chemical Society Reviews, 2015 - pubs.rsc.org
The amino acid sequence of a protein affects both its structure and its function. Thus, the
ability to modify the sequence, and hence the structure and activity, of individual proteins in …

Two strategies to engineer flexible loops for improved enzyme thermostability

H Yu, Y Yan, C Zhang, PA Dalby - Scientific reports, 2017 - nature.com
Flexible sites are potential targets for engineering the stability of enzymes. Nevertheless, the
success rate of the rigidifying flexible sites (RFS) strategy is still low due to a limited …

Hot spots-making directed evolution easier

H Yu, S Ma, Y Li, PA Dalby - Biotechnology Advances, 2022 - Elsevier
Directed evolution has emerged as a powerful strategy to engineer various properties of
proteins. Traditional methods to construct libraries such as error-prone PCR and DNA …

Directed evolution of unspecific peroxygenase from Agrocybe aegerita

P Molina-Espeja, E Garcia-Ruiz… - Applied and …, 2014 - journals.asm.org
Unspecific peroxygenase (UPO) represents a new type of heme-thiolate enzyme with self-
sufficient mono (per) oxygenase activity and many potential applications in organic …

P450-catalyzed regio-and diastereoselective steroid hydroxylation: efficient directed evolution enabled by mutability landsca**

CG Acevedo-Rocha, CG Gamble, R Lonsdale, A Li… - Acs …, 2018 - ACS Publications
Cytochrome P450 monooxygenases play a crucial role in the biosynthesis of many natural
products and in the human metabolism of numerous pharmaceuticals. This has inspired …

Computational design of enzymes for biotechnological applications

J Planas-Iglesias, SM Marques, GP Pinto, M Musil… - Biotechnology …, 2021 - Elsevier
Enzymes are the natural catalysts that execute biochemical reactions upholding life. Their
natural effectiveness has been fine-tuned as a result of millions of years of natural evolution …

Directed evolution 2.0: improving and deciphering enzyme properties

F Cheng, L Zhu, U Schwaneberg - Chemical Communications, 2015 - pubs.rsc.org
Directed evolution has matured to a routinely applied algorithm to tailor enzyme properties
to meet the demands in various applications. In order to free directed enzyme evolution from …

Enzyme engineering: reaching the maximal catalytic efficiency peak

M Goldsmith, DS Tawfik - Current opinion in structural biology, 2017 - Elsevier
Highlights•Optimization plateaus are common when engineering enzymes for higher
catalytic efficiency.•These plateaus relate to fundamental properties of evolutionary fitness …