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Shotgun metagenomics, from sampling to analysis
Diverse microbial communities of bacteria, archaea, viruses and single-celled eukaryotes
have crucial roles in the environment and in human health. However, microbes are …
have crucial roles in the environment and in human health. However, microbes are …
[HTML][HTML] Harnessing the plant microbiome to promote the growth of agricultural crops
The rhizosphere microbiome is composed of diverse microbial organisms, including
archaea, viruses, fungi, bacteria as well as eukaryotic microorganisms, which occupy a …
archaea, viruses, fungi, bacteria as well as eukaryotic microorganisms, which occupy a …
The oral microbiome–an update for oral healthcare professionals
For millions of years, our resident microbes have coevolved and coexisted with us in a
mostly harmonious symbiotic relationship. We are not distinct entities from our microbiome …
mostly harmonious symbiotic relationship. We are not distinct entities from our microbiome …
Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing
The human microbiome has emerged as a major player in regulating human health and
disease. Translational studies of the microbiome have the potential to indicate clinical …
disease. Translational studies of the microbiome have the potential to indicate clinical …
[HTML][HTML] Human genetics shape the gut microbiome
Host genetics and the gut microbiome can both influence metabolic phenotypes. However,
whether host genetic variation shapes the gut microbiome and interacts with it to affect host …
whether host genetic variation shapes the gut microbiome and interacts with it to affect host …
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
Profiling phylogenetic marker genes, such as the 16S rRNA gene, is a key tool for studies of
microbial communities but does not provide direct evidence of a community's functional …
microbial communities but does not provide direct evidence of a community's functional …
Gut microbiota from twins discordant for obesity modulate metabolism in mice
Introduction Establishing whether specific structural and functional configurations of a
human gut microbiota are causally related to a given physiologic or disease phenotype is …
human gut microbiota are causally related to a given physiologic or disease phenotype is …
The human microbiome: at the interface of health and disease
I Cho, MJ Blaser - Nature Reviews Genetics, 2012 - nature.com
Interest in the role of the microbiome in human health has burgeoned over the past decade
with the advent of new technologies for interrogating complex microbial communities. The …
with the advent of new technologies for interrogating complex microbial communities. The …
Defining the human microbiome
Rapidly develo** sequencing methods and analytical techniques are enhancing our
ability to understand the human microbiome, and, indeed, how the microbiome and its …
ability to understand the human microbiome, and, indeed, how the microbiome and its …
Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents
Diet influences health as a source of nutrients and toxins, and by sha** the composition of
resident microbial populations. Previous studies have begun to map out associations …
resident microbial populations. Previous studies have begun to map out associations …