Adaptive immune receptor repertoire analysis

V Mhanna, H Bashour, K Lê Quý, P Barennes… - Nature Reviews …, 2024 - nature.com
B cell and T cell receptor repertoires compose the adaptive immune receptor repertoire
(AIRR) of an individual. The AIRR is a unique collection of antigen-specific receptors that …

Machine-designed biotherapeutics: opportunities, feasibility and advantages of deep learning in computational antibody discovery

W Wilman, S Wróbel, W Bielska… - Briefings in …, 2022 - academic.oup.com
Antibodies are versatile molecular binders with an established and growing role as
therapeutics. Computational approaches to develo** and designing these molecules are …

[HTML][HTML] Potent neutralizing antibodies against SARS-CoV-2 identified by high-throughput single-cell sequencing of convalescent patients' B cells

Y Cao, B Su, X Guo, W Sun, Y Deng, L Bao, Q Zhu… - Cell, 2020 - cell.com
The COVID-19 pandemic urgently needs therapeutic and prophylactic interventions. Here,
we report the rapid identification of SARS-CoV-2-neutralizing antibodies by high-throughput …

Deciphering the language of antibodies using self-supervised learning

J Leem, LS Mitchell, JHR Farmery, J Barton, JD Galson - Patterns, 2022 - cell.com
An individual's B cell receptor (BCR) repertoire encodes information about past immune
responses and potential for future disease protection. Deciphering the information stored in …

Observed antibody space: a resource for data mining next-generation sequencing of antibody repertoires

A Kovaltsuk, J Leem, S Kelm, J Snowden… - The Journal of …, 2018 - journals.aai.org
Abs are immune system proteins that recognize noxious molecules for elimination. Their
sequence diversity and binding versatility have made Abs the primary class of …

Accelerating antibody discovery and design with artificial intelligence: Recent advances and prospects

G Bai, C Sun, Z Guo, Y Wang, X Zeng, Y Su… - Seminars in Cancer …, 2023 - Elsevier
Therapeutic antibodies are the largest class of biotherapeutics and have been successful in
treating human diseases. However, the design and discovery of antibody drugs remains …

The evolutionary and functional significance of germline immunoglobulin gene variation

M Pennell, OL Rodriguez, CT Watson, V Greiff - Trends in immunology, 2023 - cell.com
The recombination between immunoglobulin (IG) gene segments determines an individual's
naïve antibody repertoire and, consequently,(auto) antigen recognition. Emerging evidence …

How repertoire data are changing antibody science

C Marks, CM Deane - Journal of Biological Chemistry, 2020 - jbc.org
Antibodies are vital proteins of the immune system that recognize potentially harmful
molecules and initiate their removal. Mammals can efficiently create vast numbers of …

Comparative analysis of the CDR loops of antigen receptors

WK Wong, J Leem, CM Deane - Frontiers in immunology, 2019 - frontiersin.org
The adaptive immune system uses two main types of antigen receptors: T-cell receptors
(TCRs) and antibodies. While both proteins share a globally similar β-sandwich architecture …

Epitope profiling using computational structural modelling demonstrated on coronavirus-binding antibodies

SA Robinson, MIJ Raybould, C Schneider… - PLoS computational …, 2021 - journals.plos.org
Identifying the epitope of an antibody is a key step in understanding its function and its
potential as a therapeutic. Sequence-based clonal clustering can identify antibodies with …