Infrared difference spectroscopy of proteins: from bands to bonds

VA Lorenz-Fonfria - Chemical reviews, 2020 - ACS Publications
Infrared difference spectroscopy probes vibrational changes of proteins upon their
perturbation. Compared with other spectroscopic methods, it stands out by its sensitivity to …

Photophysics of the blue light using flavin domain

A Lukacs, PJ Tonge, SR Meech - Accounts of chemical research, 2022 - ACS Publications
Conspectus Light activated proteins are at the heart of photobiology and optogenetics, so
there is wide interest in understanding the mechanisms coupling optical excitation to protein …

Photoactivation mechanism, timing of protein secondary structure dynamics and carotenoid translocation in the orange carotenoid protein

PE Konold, IHM Van Stokkum… - Journal of the …, 2018 - ACS Publications
The orange carotenoid protein (OCP) is a two-domain photoactive protein that noncovalently
binds an echinenone (ECN) carotenoid and mediates photoprotection in cyanobacteria. In …

Spectroscopic and computational observation of glutamine tautomerization in the blue light sensing using flavin domain photoreaction

Y Hontani, J Mehlhorn, T Domratcheva… - Journal of the …, 2023 - ACS Publications
Blue light sensing using flavin (BLUF) domains constitute a family of flavin-binding
photoreceptors of bacteria and eukaryotic algae. BLUF photoactivation proceeds via a light …

QM/AMOEBA description of properties and dynamics of embedded molecules

M Nottoli, M Bondanza, P Mazzeo… - Wiley …, 2023 - Wiley Online Library
We describe the development, implementation, and application of a polarizable QM/MM
strategy, based on the AMOEBA polarizable force field, for calculating molecular properties …

Unraveling the photoactivation mechanism of a light-activated adenylyl cyclase using ultrafast spectroscopy coupled with unnatural amino acid mutagenesis

J Tolentino Collado, JN Iuliano, K Pirisi… - ACS chemical …, 2022 - ACS Publications
The hydrogen bonding network that surrounds the flavin in blue light using flavin adenine
dinucleotide (BLUF) photoreceptors plays a crucial role in sensing and communicating the …

A 100 kHz time-resolved multiple-probe femtosecond to second infrared absorption spectrometer

GM Greetham, PM Donaldson, C Nation… - Applied …, 2016 - journals.sagepub.com
We present a dual-amplifier laser system for time-resolved multiple-probe infrared (IR)
spectroscopy based on the ytterbium potassium gadolinium tungstate (Yb: KGW) laser …

A guide to time‐resolved structural analysis of light‐activated proteins

H Poddar, DJ Heyes, G Schirò, M Weik… - The FEBS …, 2022 - Wiley Online Library
Dynamical changes in protein structures are essential for protein function and occur over
femtoseconds to seconds timescales. X‐ray free electron lasers have facilitated …

Slow conformational changes of blue light sensor BLUF proteins in milliseconds

S Tokonami, M Onose, Y Nakasone… - Journal of the American …, 2022 - ACS Publications
Blue light sensor using flavin (BLUF) proteins consist of flavin-binding BLUF domains and
functional domains. Upon blue light excitation, the hydrogen bond network around the flavin …

Light-induced chromophore and protein responses and mechanical signal transduction of BLUF proteins

T Fujisawa, S Masuda - Biophysical reviews, 2018 - Springer
Photoreceptor proteins have been used to study how protein conformational changes are
induced by alterations in their environments and how their signals are transmitted to …