Constant temperature molecular dynamics methods
N Shuichi - Progress of Theoretical Physics Supplement, 1991 - academic.oup.com
How the canonical distribution is realized in simulations based on deterministic dynamical
equations is explained in this review. Basic formulations and their recent extensions of two …
equations is explained in this review. Basic formulations and their recent extensions of two …
Molecular dynamics
For a number of years, we have been exploring the underpinnings of algorithms for
simulating molecular dynamics from a mathematics perspective, ie as outsiders. We have …
simulating molecular dynamics from a mathematics perspective, ie as outsiders. We have …
Deterministic thermostats, theories of nonequilibrium systems and parallels with the ergodic condition
OG Jepps, L Rondoni - Journal of Physics A: Mathematical and …, 2010 - iopscience.iop.org
Deterministic'thermostats' are mathematical tools used to model nonequilibrium steady
states of fluids. The resulting dynamical systems correctly represent the transport properties …
states of fluids. The resulting dynamical systems correctly represent the transport properties …
[HTML][HTML] Questaal: A package of electronic structure methods based on the linear muffin-tin orbital technique
This paper summarises the theory and functionality behind Questaal, an open-source suite
of codes for calculating the electronic structure and related properties of materials from first …
of codes for calculating the electronic structure and related properties of materials from first …
Spin dynamics in magnets: Equation of motion and finite temperature effects
General equations of motion are introduced for the evaluation of spin dynamics in magnetic
materials. The theory uses the adiabatic separation of diagonal and off-diagonal …
materials. The theory uses the adiabatic separation of diagonal and off-diagonal …
Kinetic moments method for the canonical ensemble distribution
WG Hoover, BL Holian - Physics Letters A, 1996 - Elsevier
Simultaneous integral control of the kinetic energy〈 K〉 and its fluctuation〈 K2〉-〈 K〉 2
gives an extended phase-space distribution consistent with Gibbs' canonical one. This …
gives an extended phase-space distribution consistent with Gibbs' canonical one. This …
Energy fluctuations induced by the Nosé thermostat
DM Bylander, L Kleinman - Physical Review B, 1992 - APS
The Nosé thermostat is a method for simulating a canonical ensemble in molecular-
dynamics calculations. It is generally agreed that for large values of Q, the parameter …
dynamics calculations. It is generally agreed that for large values of Q, the parameter …
Fluctuation formulas in molecular-dynamics simulations with the weak coupling heat bath
T Morishita - The Journal of Chemical Physics, 2000 - pubs.aip.org
The statistical mechanical ensemble associated with molecular-dynamics (MD) simulations
with the weak coupling (WC) thermostat proposed by Berendsen et al.[J. Chem. Phys. 81 …
with the weak coupling (WC) thermostat proposed by Berendsen et al.[J. Chem. Phys. 81 …
Cell-level canonical sampling by velocity scaling for multiparticle collision dynamics simulations
A local Maxwellian thermostat for the multiparticle collision dynamics algorithm is proposed.
The algorithm is based on a scaling of the relative velocities of the fluid particles within a …
The algorithm is based on a scaling of the relative velocities of the fluid particles within a …
Canonical ensembles from chaos
We present methods to compute thermodynamic properties of classical systems which
involve extending the phase space by two degrees of freedom. These two additional …
involve extending the phase space by two degrees of freedom. These two additional …