[HTML][HTML] BlastKOALA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences
M Kanehisa, Y Sato, K Morishima - Journal of molecular biology, 2016 - Elsevier
BlastKOALA and GhostKOALA are automatic annotation servers for genome and
metagenome sequences, which perform KO (KEGG Orthology) assignments to characterize …
metagenome sequences, which perform KO (KEGG Orthology) assignments to characterize …
OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity
OrthoDB provides evolutionary and functional annotations of genes in a diverse sampling of
eukaryotes, prokaryotes, and viruses. Genomics continues to accelerate our exploration of …
eukaryotes, prokaryotes, and viruses. Genomics continues to accelerate our exploration of …
Advance computational tools for multiomics data learning
The burgeoning field of bioinformatics has seen a surge in computational tools tailored for
omics data analysis driven by the heterogeneous and high-dimensional nature of omics …
omics data analysis driven by the heterogeneous and high-dimensional nature of omics …
OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs
Abstract OrthoDB (https://www. orthodb. org) provides evolutionary and functional
annotations of orthologs. This update features a major scaling up of the resource coverage …
annotations of orthologs. This update features a major scaling up of the resource coverage …
OrthoDB in 2020: evolutionary and functional annotations of orthologs
OrthoDB provides evolutionary and functional annotations of orthologs, inferred for a vast
number of available organisms. OrthoDB is leading in the coverage and genomic diversity …
number of available organisms. OrthoDB is leading in the coverage and genomic diversity …
eggNOG v4. 0: nested orthology inference across 3686 organisms
With the increasing availability of various 'omics data, high-quality orthology assignment is
crucial for evolutionary and functional genomics studies. We here present the fourth version …
crucial for evolutionary and functional genomics studies. We here present the fourth version …
Genome of wild olive and the evolution of oil biosynthesis
Here we present the genome sequence and annotation of the wild olive tree (Olea europaea
var. sylvestris), called oleaster, which is considered an ancestor of cultivated olive trees …
var. sylvestris), called oleaster, which is considered an ancestor of cultivated olive trees …
[HTML][HTML] Alterations of immune response of non-small cell lung cancer with azacytidine
Innovative therapies are needed for advanced Non-Small Cell Lung Cancer (NSCLC). We
have undertaken a genomics based, hypothesis driving, approach to query an emerging …
have undertaken a genomics based, hypothesis driving, approach to query an emerging …
OrthoDB and BUSCO update: annotation of orthologs with wider sampling of genomes
Abstract OrthoDB (https://www. orthodb. org) offers evolutionary and functional annotations
of orthologous genes in the widest sampling of eukaryotes, prokaryotes, and viruses …
of orthologous genes in the widest sampling of eukaryotes, prokaryotes, and viruses …
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software
Orthology, refining the concept of homology, is the cornerstone of evolutionary comparative
studies. With the ever-increasing availability of genomic data, inference of orthology has …
studies. With the ever-increasing availability of genomic data, inference of orthology has …