Virus taxonomy in the age of metagenomics

P Simmonds, MJ Adams, M Benkő, M Breitbart… - Nature Reviews …, 2017 - nature.com
The number and diversity of viral sequences that are identified in metagenomic data far
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …

Eukaryotic circular rep-encoding single-stranded DNA (CRESS DNA) viruses: ubiquitous viruses with small genomes and a diverse host range

L Zhao, K Rosario, M Breitbart, S Duffy - Advances in virus research, 2019 - Elsevier
While single-stranded DNA (ssDNA) was once thought to be a relatively rare genomic
architecture for viruses, modern metagenomics sequencing has revealed circular ssDNA …

Membrane vesicles in sea water: heterogeneous DNA content and implications for viral abundance estimates

SJ Biller, LD McDaniel, M Breitbart, E Rogers… - The ISME …, 2017 - academic.oup.com
Diverse microbes release membrane-bound extracellular vesicles from their outer surfaces
into the surrounding environment. Vesicles are found in numerous habitats including the …

[HTML][HTML] Novel virus identification through metagenomics: a systematic review

C Bassi, P Guerriero, M Pierantoni, E Callegari… - Life, 2022 - mdpi.com
Metagenomic Next Generation Sequencing (mNGS) allows the evaluation of complex
microbial communities, avoiding isolation and cultivation of each microbial species, and …

[HTML][HTML] Pervasive chimerism in the replication-associated proteins of uncultured single-stranded DNA viruses

D Kazlauskas, A Varsani, M Krupovic - Viruses, 2018 - mdpi.com
Numerous metagenomic studies have uncovered a remarkable diversity of circular
replication-associated protein (Rep)-encoding single-stranded (CRESS) DNA viruses, the …

The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification

P Aiewsakun, P Simmonds - Microbiome, 2018 - Springer
Abstract Background The International Committee on Taxonomy of Viruses (ICTV) classifies
viruses into families, genera and species and provides a regulated system for their …

Single-stranded DNA phages: from early molecular biology tools to recent revolutions in environmental microbiology

AJ Székely, M Breitbart - FEMS Microbiology Letters, 2016 - academic.oup.com
Single-stranded DNA (ssDNA) phages are profoundly different from tailed phages in many
aspects including the nature and size of their genome, virion size and morphology, mutation …

[HTML][HTML] A Mechanically Transmitted DNA Mycovirus Is Targeted by the Defence Machinery of Its Host, Botrytis cinerea

ME Khalifa, RM MacDiarmid - Viruses, 2021 - mdpi.com
Eukaryotic circular single-stranded DNA (ssDNA) viruses were known only to infect plants
and vertebrates until the discovery of the isolated DNA mycovirus from the fungus Sclerotinia …

[HTML][HTML] Virological sampling of inaccessible wildlife with drones

JL Geoghegan, V Pirotta, E Harvey, A Smith… - Viruses, 2018 - mdpi.com
There is growing interest in characterizing the viromes of diverse mammalian species,
particularly in the context of disease emergence. However, little is known about virome …

Viral Outbreak in Corals Associated with an In Situ Bleaching Event: Atypical Herpes-Like Viruses and a New Megavirus Infecting Symbiodinium

AMS Correa, TD Ainsworth, SM Rosales… - Frontiers in …, 2016 - frontiersin.org
Previous studies of coral viruses have employed either microscopy or metagenomics, but
few have attempted to comprehensively link the presence of a virus-like particle (VLP) to a …