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Virus taxonomy in the age of metagenomics
The number and diversity of viral sequences that are identified in metagenomic data far
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …
Eukaryotic circular rep-encoding single-stranded DNA (CRESS DNA) viruses: ubiquitous viruses with small genomes and a diverse host range
While single-stranded DNA (ssDNA) was once thought to be a relatively rare genomic
architecture for viruses, modern metagenomics sequencing has revealed circular ssDNA …
architecture for viruses, modern metagenomics sequencing has revealed circular ssDNA …
Membrane vesicles in sea water: heterogeneous DNA content and implications for viral abundance estimates
Diverse microbes release membrane-bound extracellular vesicles from their outer surfaces
into the surrounding environment. Vesicles are found in numerous habitats including the …
into the surrounding environment. Vesicles are found in numerous habitats including the …
[HTML][HTML] Novel virus identification through metagenomics: a systematic review
C Bassi, P Guerriero, M Pierantoni, E Callegari… - Life, 2022 - mdpi.com
Metagenomic Next Generation Sequencing (mNGS) allows the evaluation of complex
microbial communities, avoiding isolation and cultivation of each microbial species, and …
microbial communities, avoiding isolation and cultivation of each microbial species, and …
[HTML][HTML] Pervasive chimerism in the replication-associated proteins of uncultured single-stranded DNA viruses
Numerous metagenomic studies have uncovered a remarkable diversity of circular
replication-associated protein (Rep)-encoding single-stranded (CRESS) DNA viruses, the …
replication-associated protein (Rep)-encoding single-stranded (CRESS) DNA viruses, the …
The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification
Abstract Background The International Committee on Taxonomy of Viruses (ICTV) classifies
viruses into families, genera and species and provides a regulated system for their …
viruses into families, genera and species and provides a regulated system for their …
Single-stranded DNA phages: from early molecular biology tools to recent revolutions in environmental microbiology
Single-stranded DNA (ssDNA) phages are profoundly different from tailed phages in many
aspects including the nature and size of their genome, virion size and morphology, mutation …
aspects including the nature and size of their genome, virion size and morphology, mutation …
[HTML][HTML] A Mechanically Transmitted DNA Mycovirus Is Targeted by the Defence Machinery of Its Host, Botrytis cinerea
Eukaryotic circular single-stranded DNA (ssDNA) viruses were known only to infect plants
and vertebrates until the discovery of the isolated DNA mycovirus from the fungus Sclerotinia …
and vertebrates until the discovery of the isolated DNA mycovirus from the fungus Sclerotinia …
[HTML][HTML] Virological sampling of inaccessible wildlife with drones
There is growing interest in characterizing the viromes of diverse mammalian species,
particularly in the context of disease emergence. However, little is known about virome …
particularly in the context of disease emergence. However, little is known about virome …
Viral Outbreak in Corals Associated with an In Situ Bleaching Event: Atypical Herpes-Like Viruses and a New Megavirus Infecting Symbiodinium
Previous studies of coral viruses have employed either microscopy or metagenomics, but
few have attempted to comprehensively link the presence of a virus-like particle (VLP) to a …
few have attempted to comprehensively link the presence of a virus-like particle (VLP) to a …