Biological research and self-driving labs in deep space supported by artificial intelligence

LM Sanders, RT Scott, JH Yang, AA Qutub… - Nature Machine …, 2023 - nature.com
Abstract Space biology research aims to understand fundamental spaceflight effects on
organisms, develop foundational knowledge to support deep space exploration and …

Evaluating domain ontologies: clarification, classification, and challenges

M McDaniel, VC Storey - ACM Computing Surveys (CSUR), 2019 - dl.acm.org
The number of applications being developed that require access to knowledge about the
real world has increased rapidly over the past two decades. Domain ontologies, which …

[HTML][HTML] LOT: An industrial oriented ontology engineering framework

M Poveda-Villalón, A Fernández-Izquierdo… - … Applications of Artificial …, 2022 - Elsevier
Ontology Engineering has captured much attention during the last decades leading to the
proliferation of numerous works regarding methodologies, guidelines, tools, resources, etc …

Democratizing knowledge representation with BioCypher

S Lobentanzer, P Aloy, J Baumbach, B Bohar… - Nature …, 2023 - nature.com
Biomedical data are amassed at an ever-increasing rate, and machine learning tools that
use prior knowledge in combination with biomedical big data are gaining much traction 1, 2 …

BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications

PL Whetzel, NF Noy, NH Shah… - Nucleic acids …, 2011 - academic.oup.com
Abstract The National Center for Biomedical Ontology (NCBO) is one of the National Centers
for Biomedical Computing funded under the NIH Roadmap Initiative. Contributing to the …

The role of ontologies in biological and biomedical research: a functional perspective

R Hoehndorf, PN Schofield… - Briefings in …, 2015 - academic.oup.com
Ontologies are widely used in biological and biomedical research. Their success lies in their
combination of four main features present in almost all ontologies: provision of standard …

WikiPathways: building research communities on biological pathways

T Kelder, MP Van Iersel, K Hanspers… - Nucleic acids …, 2012 - academic.oup.com
Here, we describe the development of WikiPathways (http://www. wikipathways. org), a
public wiki for pathway curation, since it was first published in 2008. New features are …

Modeling sample variables with an Experimental Factor Ontology

J Malone, E Holloway, T Adamusiak… - …, 2010 - academic.oup.com
Motivation: Describing biological sample variables with ontologies is complex due to the
cross-domain nature of experiments. Ontologies provide annotation solutions; however, for …

Automated methods for the summarization of electronic health records

R Pivovarov, N Elhadad - Journal of the American Medical …, 2015 - academic.oup.com
Objectives This review examines work on automated summarization of electronic health
record (EHR) data and in particular, individual patient record summarization. We organize …

[KİTAP][B] Systems biology: a textbook

E Klipp, W Liebermeister, C Wierling, A Kowald - 2016 - books.google.com
This advanced textbook is tailored for an introductory course in Systems Biology and is well-
suited for biologists as well as engineers and computer scientists. It comes with student …