Applications of multi-omics technologies for crop improvement

Y Yang, MA Saand, L Huang, WB Abdelaal… - Frontiers in Plant …, 2021 - frontiersin.org
Multiple “omics” approaches have emerged as successful technologies for plant systems
over the last few decades. Advances in next-generation sequencing (NGS) have paved a …

Exploiting induced and natural epigenetic variation for crop improvement

NM Springer, RJ Schmitz - Nature reviews genetics, 2017 - nature.com
Plant breeding has traditionally relied on combining the genetic diversity present within a
species to develop combinations of alleles that provide desired traits. Epigenetic diversity …

1,135 genomes reveal the global pattern of polymorphism in Arabidopsis thaliana

C Alonso-Blanco, J Andrade, C Becker, F Bemm… - Cell, 2016 - cell.com
Arabidopsis thaliana serves as a model organism for the study of fundamental physiological,
cellular, and molecular processes. It has also greatly advanced our understanding of …

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

N Daccord, JM Celton, G Linsmith, C Becker… - Nature …, 2017 - nature.com
Using the latest sequencing and optical map** technologies, we have produced a high-
quality de novo assembly of the apple (Malus domestica Borkh.) genome. Repeat …

Widespread natural variation of DNA methylation within angiosperms

CE Niederhuth, AJ Bewick, L Ji, MS Alabady, KD Kim… - Genome biology, 2016 - Springer
Background DNA methylation is an important feature of plant epigenomes, involved in the
formation of heterochromatin and affecting gene expression. Extensive variation of DNA …

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

IAP Parkin, C Koh, H Tang, SJ Robinson, S Kagale… - Genome biology, 2014 - Springer
Background Brassica oleracea is a valuable vegetable species that has contributed to
human health and nutrition for hundreds of years and comprises multiple distinct cultivar …

Epigenetics for crop improvement in times of global change

I Kakoulidou, EV Avramidou, M Baránek… - Biology, 2021 - mdpi.com
Simple Summary Research on plant epigenetics aims to understand how endogenous,
biotic, and abiotic factors regulate plant development and growth independent of changes in …

Dynamic DNA methylation reconfiguration during seed development and germination

T Kawakatsu, JR Nery, R Castanon, JR Ecker - Genome biology, 2017 - Springer
Background Unlike animals, plants can pause their life cycle as dormant seeds. In both
plants and animals, DNA methylation is involved in the regulation of gene expression and …

Soybean domestication: the origin, genetic architecture and molecular bases

EJ Sedivy, F Wu, Y Hanzawa - New Phytologist, 2017 - Wiley Online Library
Domestication provides an important model for the study of evolution, and information
learned from domestication research aids in the continued improvement of crop species …

Climate change impacts on seagrass meadows and macroalgal forests: an integrative perspective on acclimation and adaptation potential

B Duarte, I Martins, R Rosa, AR Matos… - Frontiers in Marine …, 2018 - frontiersin.org
Marine macrophytes are the foundation of algal forests and seagrass meadows–some of the
most productive and diverse coastal marine ecosystems on the planet. These ecosystems …