Bacterial valorization of lignin: strains, enzymes, conversion pathways, biosensors, and perspectives

S Lee, M Kang, JH Bae, JH Sohn… - … in bioengineering and …, 2019 - frontiersin.org
Lignin, an aromatic polymer found in plants, has been studied for years in many biological
fields. Initially, when biofuel was produced from lignocellulosic biomass, lignin was regarded …

Biology of Pseudomonas stutzeri

J Lalucat, A Bennasar, R Bosch… - Microbiology and …, 2006 - Am Soc Microbiol
Pseudomonas stutzeri is a nonfluorescent denitrifying bacterium widely distributed in the
environment, and it has also been isolated as an opportunistic pathogen from humans. Over …

The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse

MP McLeod, RL Warren, WWL Hsiao… - Proceedings of the …, 2006 - National Acad Sciences
Rhodococcus sp. RHA1 (RHA1) is a potent polychlorinated biphenyl-degrading soil
actinomycete that catabolizes a wide range of compounds and represents a genus of …

Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility

PSG Chain, VJ Denef… - Proceedings of the …, 2006 - National Acad Sciences
Burkholderia xenovorans LB400 (LB400), a well studied, effective polychlorinated biphenyl-
degrader, has one of the two largest known bacterial genomes and is the first …

The Complete Genome Sequence of the Plant Growth-Promoting Bacterium Pseudomonas sp. UW4

J Duan, W Jiang, Z Cheng, JJ Heikkila, BR Glick - PloS one, 2013 - journals.plos.org
The plant growth-promoting bacterium (PGPB) Pseudomonas sp. UW4, previously isolated
from the rhizosphere of common reeds growing on the campus of the University of Waterloo …

Genome analysis of the metabolically versatile Pseudomonas umsongensis GO16: the genetic basis for PET monomer upcycling into polyhydroxyalkanoates

T Narancic, M Salvador, GM Hughes… - Microbial …, 2021 - Wiley Online Library
The throwaway culture related to the single‐use materials such as polyethylene
terephthalate (PET) has created a major environmental concern. Recycling of PET waste …

Insights into the genomic basis of niche specificity of Pseudomonas putida KT2440

VAPM Dos Santos, S Heim, ERB Moore… - Environmental …, 2004 - Wiley Online Library
A major challenge in microbiology is the elucidation of the genetic and ecophysiological
basis of habitat specificity of microbes. Pseudomonas putida is a paradigm of a ubiquitous …

Genomic analysis reveals the major driving forces of bacterial life in the rhizosphere

MA Matilla, M Espinosa-Urgel, JJ Rodríguez-Herva… - Genome biology, 2007 - Springer
Background Mutualistic interactions less well known than those between rhizobia and
legumes are commonly found between plants and bacteria, frequently pseudomonads …

Whole genome analysis of halotolerant and alkalotolerant plant growth-promoting rhizobacterium Klebsiella sp. D5A

W Liu, Q Wang, J Hou, C Tu, Y Luo, P Christie - Scientific reports, 2016 - nature.com
This research undertook the systematic analysis of the Klebsiella sp. D5A genome and
identification of genes that contribute to plant growth-promoting (PGP) traits, especially …

Transcriptional tradeoff between metabolic and stress-response programs in Pseudomonas putida KT2440 cells exposed to toluene

P Domínguez-Cuevas, JE González-Pastor… - Journal of Biological …, 2006 - ASBMB
When Pseudomonas putida KT2440 cells encounter toluene in the growth medium, they
perceive it simultaneously as a potential nutrient to be metabolized, as a membrane …