Insect mitochondrial genomics: implications for evolution and phylogeny

SL Cameron - Annual review of entomology, 2014 - annualreviews.org
The mitochondrial (mt) genome is, to date, the most extensively studied genomic system in
insects, outnumbering nuclear genomes tenfold and representing all orders versus very few …

Mitochondrial metagenomics: letting the genes out of the bottle

A Crampton-Platt, DW Yu, X Zhou, AP Vogler - GigaScience, 2016 - academic.oup.com
Abstract 'Mitochondrial metagenomics'(MMG) is a methodology for shotgun sequencing of
total DNA from specimen mixtures and subsequent bioinformatic extraction of mitochondrial …

Genetic diagnosis of Mendelian disorders via RNA sequencing

LS Kremer, DM Bader, C Mertes, R Kopajtich… - Nature …, 2017 - nature.com
Across a variety of Mendelian disorders,∼ 50–75% of patients do not receive a genetic
diagnosis by exome sequencing indicating disease-causing variants in non-coding regions …

Towards next‐generation biodiversity assessment using DNA metabarcoding

P Taberlet, E Coissac, F Pompanon… - Molecular …, 2012 - Wiley Online Library
Virtually all empirical ecological studies require species identification during data collection.
DNA metabarcoding refers to the automated identification of multiple species from a single …

CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences

C Liu, L Shi, Y Zhu, H Chen, J Zhang, X Lin, X Guan - BMC genomics, 2012 - Springer
Background The complete sequences of chloroplast genomes provide wealthy information
regarding the evolutionary history of species. With the advance of next-generation …

Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database

A Bissett, A Fitzgerald, T Meintjes, PM Mele, F Reith… - GigaScience, 2016 - Springer
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …

Multiplex sequencing of pooled mitochondrial genomes—a crucial step toward biodiversity analysis using mito-metagenomics

M Tang, M Tan, G Meng, S Yang, XU Su… - Nucleic acids …, 2014 - academic.oup.com
The advent in high-throughput-sequencing (HTS) technologies has revolutionized
conventional biodiversity research by enabling parallel capture of DNA sequences …

How to sequence and annotate insect mitochondrial genomes for systematic and comparative genomics research

S Cameron - Systematic Entomology, 2014 - eprints.qut.edu.au
Over the past decade the mitochondrial (mt) genome has become the most widely used
genomic resource available for systematic entomology. While the availability of other types …

Building the C oleoptera tree‐of‐life for> 8000 species: composition of public DNA data and fit with L innaean classification

L Bocak, C Barton, A Crampton‐Platt… - Systematic …, 2014 - Wiley Online Library
The species representation of public databases is growing rapidly and permits increasingly
detailed phylogenetic inferences. We present a supermatrix based on all gene sequences of …

Higher‐level phylogeny of longhorn beetles (Coleoptera: Chrysomeloidea) inferred from mitochondrial genomes

R Nie, AP Vogler, XK Yang, M Lin - Systematic Entomology, 2021 - Wiley Online Library
Cerambycidae (longhorn beetles) and related families in the superfamily Chrysomeloidea
are important components of forest ecosystems and play a key role in nutrient cycling and …