Museum genomics

DC Card, B Shapiro, G Giribet, C Moritz… - Annual review of …, 2021 - annualreviews.org
Natural history collections are invaluable repositories of biological information that provide
an unrivaled record of Earth's biodiversity. Museum genomics—genomics research using …

Beyond predictions: biodiversity conservation in a changing climate

TP Dawson, ST Jackson, JI House, IC Prentice… - science, 2011 - science.org
Climate change is predicted to become a major threat to biodiversity in the 21st century, but
accurate predictions and effective solutions have proved difficult to formulate. Alarming …

Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)

A Rambaut, TT Lam, L Max Carvalho… - Virus …, 2016 - academic.oup.com
Gene sequences sampled at different points in time can be used to infer molecular
phylogenies on a natural timescale of months or years, provided that the sequences in …

The configuration of Northern Hemisphere ice sheets through the Quaternary

CL Batchelor, M Margold, M Krapp, DK Murton… - Nature …, 2019 - nature.com
Our understanding of how global climatic changes are translated into ice-sheet fluctuations
and sea-level change is currently limited by a lack of knowledge of the configuration of ice …

[PDF][PDF] PHYLACINE 1.2: the phylogenetic atlas of mammal macroecology

S Faurby, M Davis, RØ Pedersen, SD Schowanek… - Ecology, 2018 - researchgate.net
Data needed for macroecological analyses are difficult to compile and often hidden away in
supplementary material under non-standardized formats. Phylogenies, range data, and trait …

A fast and efficient single-stranded genomic library preparation method optimized for ancient DNA

JD Kapp, RE Green, B Shapiro - Journal of Heredity, 2021 - academic.oup.com
We present a protocol to prepare extracted DNA for sequencing on the Illumina sequencing
platform that has been optimized for ancient and degraded DNA. Our approach, the Santa …

The fossilized birth–death process for coherent calibration of divergence-time estimates

TA Heath, JP Huelsenbeck, T Stadler - Proceedings of the National …, 2014 - pnas.org
Time-calibrated species phylogenies are critical for addressing a wide range of questions in
evolutionary biology, such as those that elucidate historical biogeography or uncover …

[HTML][HTML] Deglaciation of the north American ice sheet complex in calendar years based on a comprehensive database of chronological data: NADI-1

AS Dalton, HE Dulfer, M Margold, J Heyman… - Quaternary Science …, 2023 - Elsevier
The most recent deglaciation of the North American Ice Sheet Complex (NAISC: comprising
the Innuitian, Cordilleran, and Laurentide ice sheets) offers a broad perspective from which …

BEAST: Bayesian evolutionary analysis by sampling trees

AJ Drummond, A Rambaut - BMC evolutionary biology, 2007 - Springer
Background The evolutionary analysis of molecular sequence variation is a statistical
enterprise. This is reflected in the increased use of probabilistic models for phylogenetic …

Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci

MS Gill, P Lemey, NR Faria, A Rambaut… - Molecular biology …, 2013 - academic.oup.com
Effective population size is fundamental in population genetics and characterizes genetic
diversity. To infer past population dynamics from molecular sequence data, coalescent …